Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1717 ATGTCTTCTGCCGGCGGCGACAGGGGCGGCGGCGCTACCTCCGGCGACCCTCGCCAATACTTCTGCCACCAGTGCAACCGCACCGTCTCAATTTCCCCTTCCCCCTCCTCCGATCTCCTCTGCCCCACTTGCAACGGCGGCTTCCTCGAAGAACTCGAATTCCCAATCCCCAACCCTAACCCTAACCCTCCCAATCCCTTCTTCCCCGACTTCCCCCTCGCCGGCGCCGCCACCATTCCCCTCGTCCTCCCCGGCGCCGCCGCCTCCCCTCCCTTCGAGGATCTCTCCGCCCTCTTCGGAAACCGACCCGACGCCGCCGCCGATGCCTTCAACCCCCTCGTCTTCCTCCAGAACTACTTCCAAACCCTAAGAGCCGGCGGCAACCTCCAATTGGTGATAGAGTCCGGCGACCCTGGCGGAGCGTTCCGCTTCCCCGGCGTCACCCACGGCGACTACTTCTTTGGGCCGGGCCTCGAGGAGCTGATCCAGCATCTCGCTGAGAACGATCCCAACCGTTACGGCACCCCGCCGGCCTCCAAGTCGGTCGTCGAGGGCCTGCCGGACGTCTCCGTCACCGAGGAGCTGCTGGCGTCGGATTCCTCGCAGTGCGCCGTGTGCAAAGACACCTTCGAGCTCGGCGAGACCGCGAAGCAGATCCCCTGTAAGCATATATATCACGCGGATTGCATTTTGCCGTGGTTGGAATTGCACAATTCTTGCCCCGTTTGTCGGTATGAGTTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCGTCGTGGTGGTAGTGGTGGTGGTGGTGCTGCCGGCAGTGGGGCAGCTCCACAGGTGAATTGGAACATGGCATTGGGGTCCGGTGGTTCTGCGGATTCATCTGGTAGCGGTGGCGGTGATAATTCACAGAGGAGAAGGTTTAGGGTGTCTTTGCCATGGCCGTTTAGGCAATTTGCTGAGACAAGTAATGTTGGGAGTGGCAACAATGATAGCAACAATAACAACAACAGCAATAGCAATAGTGACAGTAGTGGAAATAATGGTGGGCAATCGAACTCTGGAAACCGGGGGAATCAGAATTTTGACTCGGAGACCAGACAGGAAGATCTCGATTGA 1110 0.5919 MSSAGGDRGGGATSGDPRQYFCHQCNRTVSISPSPSSDLLCPTCNGGFLEELEFPIPNPNPNPPNPFFPDFPLAGAATIPLVLPGAAASPPFEDLSALFGNRPDAAADAFNPLVFLQNYFQTLRAGGNLQLVIESGDPGGAFRFPGVTHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSVVEGLPDVSVTEELLASDSSQCAVCKDTFELGETAKQIPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRARRGGSGGGGAAGSGAAPQVNWNMALGSGGSADSSGSGGGDNSQRRRFRVSLPWPFRQFAETSNVGSGNNDSNNNNNSNSNSDSSGNNGGQSNSGNRGNQNFDSETRQEDLD* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1717 369 MobiDBLite consensus disorder prediction 318 359 - -
Gso16g1717 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 12 325 - -
Gso16g1717 369 MobiDBLite consensus disorder prediction 318 369 - -
Gso16g1717 369 CDD RING-H2_RNF126_like 202 244 - -
Gso16g1717 369 SUPERFAMILY RING/U-box 186 250 - -
Gso16g1717 369 MobiDBLite consensus disorder prediction 281 301 - -
Gso16g1717 369 MobiDBLite consensus disorder prediction 248 302 - -
Gso16g1717 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 325 - -
Gso16g1717 369 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Gso16g1717 369 Pfam Zinc finger, C3HC4 type (RING finger) 202 243 - -
Gso16g1717 369 SMART ring_2 203 243 IPR001841 -
Gso16g1717 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 250 IPR013083 -
Gso16g1717 369 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1717 Gso-Chr16 37692704 37696898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1717 161 259 C3H Transcription Factor Family AT5G15820 55.556 1.62e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1717 - K11982 gmx:100818686 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1717 16 37692704 37696898 Gso9g1361 9 37416826 37425638 GST