Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1705 ATGGCTTTGGGATCATGTTCCTCTTCCTTCAACTATGATGTTTTCCTCAGCTTCAGAGGCGCAGACACACGACATGGTTTTACCGGAAATCTTTACAAAGCTCTTGATGACAGGGGAATCTACACTTTCATTGATGATGAGGAGCTCCAGAGTGGAGAGGAAATAACACCAGCACTTCTGAAGGCAATTCAAGAGTCCAGGATTGCCATCACTGTGCTCTCTATAAATTATGCTTCTTCCTCATTTTGCTTAGATGAACTTGCCTACATTCTTGAGTGCTTTAAGAGCAAAAATCTGTTGGTTGTGCCAGTCTTTTATAACGTGGATCCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGAGAAGCATTGGCTAAGCATCAGGAAAGGTTCAACCACAACATGGAGAAGTTGGAGTATTGGAAGAAGGCTCTGCATCAAGTAGCTAACTTGTCTGGCTTTCATTTCAAACACGGAGAAGGGTATGAATATGAGTTTATTGGGAGGATTGTTGAGTTGGTCTCCAGCAAGATCAATCATGCTCCTTTGCCTGTTGCGGATTACCCGATTGGACTAGAATCAAGATTACTAGAAGTAACAAAGCTTTTGGATGTTGAATCTGATGATGGTGTCTACATGATAGGGATCCATGGAATTGGTGGGATAGGAAAATCAACACTTGCTATAGCAGTTTATAATTTGATTGCTTGCCATTTTGATGGTTCATGTTTTCTTAAAGATTTGAGAGAAAAATCAAACAAGAAGGGGTTACAACACCTCCAGAGCATCCTTCTTCGGGAAATACTTGGAGAGAAGGAAATCAACTTAGCAAGTGTTGAACAAGGAGCTTCAATTATACAACATAGGCTTCAGCGAAAGAAGGTTCTCTTGATTTTAGATGATGTTGACAAGCATGAACAATTACAGGCTATTGTTGGAAGACCTTGTTGGTTTGGTCCAGGCAGTAGAGTCATCATCACCACTCGGGACAAACAACTGCTAGCATCTCATGGGGTTAAAAGAACATATGAAGTGGAACTATTGAATGAGAACAATGCTCTTCAATTGCTTACATGGAAATCTTTTAAAACCGAAAAGGTTGATCCAAGTTATAAGGAGGTCTTGAATGATGTAGTAATTTATGCTTCTGGCCTTCCATTAGCTTTGGAAGTGATAGGTTCCAACTTGTTCGGGAAAAGCATAGAAGAATGGAAATCTGCTATCAAACAATATAAAAGAATTCCCGGCATTCAAATCCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAACAAAAGAATGTTTTCCTTGACATTGCCTGTTGCTTCAATAGATATGACTTGACAAAGGTTGAAGATATACTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTGGTTGAAAAATCTCTTATAAAAAAGAAGTTTAGTTGGTATGGTAGAGTACCTAGAGTTACAATGCATGACTTGATTGAGGACATGGGAAAAGAAATTGTCAGGCAAGAATCACCGAAAGAGCCAGAGAAGCGCAGTAGACTATGGTTACCGGAAGATATAATTCATGTTTTGGAAGACAACAGGGGAACTAGTGAAATTGAAATCATATGTCTAGACTTCCCCAGCTTTGACAAAGAAGAAATAGTAGTAGAATTAAATACAAAGGCTTTCAAGAAGATGAAAAACCTCAAAACACTTATTATTAGAAATGGTAAATTTTCCAAAGGTCCCAAATATCTTCCAAATAACTTGAGAGTACTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTGATTTTCATCCGAAAAAACTTGCCATATGCAAGTTACCCTTTAGTTGTATTTCGTCATTTGAGTTGGATGGCTTATGGAAGATGTTCGTGAATCTAAGAATATTGAATTTTGATAGGTGCGAAGGGTTAACACAGATTCCTGACGTATCTGGTCTGCCAAATTTAGAGGAATTTTCATTTGAATGCTGCTTTAATTTAATTACAGTTCACAATTCAATTGGTTTTCTGGATAAGCTTAAAATATTGAATGCTTTTAGATGCAAAAGGCTTAGAAGTTTTCCACCTATCAAGTTGACTTCTCTTGAAAAACTTAATCTTTCATTTTGTTACAGTCTTGAGAGTTTTCCAAAAATATTAGGAAAGATGGAAAACATAAGACAACTTTGTTTGTCAGAGTCTTCCATAACAGAATTGCCATTTTCATTTCAAAATCTTGCTGGGCTTAGAGGATTAGAACTGCTCTTTTTAAGTCCTCATACAATTTTTAAGGTGCCAAGTAGCATTGTCCTGATGCCGGAACTGACTGTAATCCGCGCCCTGGGATTGAAAGGGTGGCAATGGCTAAAACAGGAAGAGGGTGAAGAAAAAACGGGGTCAATAGTATCTTCAATGGTAGAAATGCTTACTGTCTCAAGTTGCAACCTCTGTGATGAATTTTTTTCAATAGATTTTACTTGGTTTGCACATATGAAGGAATTATGTCTATCCAAGAATAATTTCACAATCCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAGGAAACTTGATGTATGTGGCTGCAAGCATCTTCGGGAAATTAGAGGGATTCCACCAAACTTAAAGCATTTCTTTGCAATAAACTGTAAATCATTGACTTCCTCAAGTATAAGAAAGTTCCTAAATCAGGAACTGCATGAGGCTGGAAACACTGTGTTTTGTTTGCCAGGTAAAAGGATTCCAGAGTGGTTCGATCAGCAAAGCAGGGGACCTTCAATTTCTTTCTGGTTTCGTAATAAGTTCCCTGACATGGTTCTTTGTCTTATTGTTGCACCCATTCGATCCCAATTTTTTCGTCCCGAGGTATTCATCAATGGCAATGAATGTTCCCCTTATAGTTGCTATTTCCAGAAAGGAATGCACCATGCATATCTTTGTGATCTACGAGAGATAGAATTCAGAAACAGTCCGTATGAGGTGCCTTTCGAAAATGGATGGAACCATGTGAATGTTACATGTCCTCGTTGTATAGATACCTATATCTACCCTGTTAAAATGGGAATCCATATATTTAAACAGGAACATGCCATGGAGGATGTTCGATTTACTGATCCTTTTATAGCAAGAGAAAATCAGACGATGATGTAG 3159 0.3799 MALGSCSSSFNYDVFLSFRGADTRHGFTGNLYKALDDRGIYTFIDDEELQSGEEITPALLKAIQESRIAITVLSINYASSSFCLDELAYILECFKSKNLLVVPVFYNVDPSDVRHQKGSYGEALAKHQERFNHNMEKLEYWKKALHQVANLSGFHFKHGEGYEYEFIGRIVELVSSKINHAPLPVADYPIGLESRLLEVTKLLDVESDDGVYMIGIHGIGGIGKSTLAIAVYNLIACHFDGSCFLKDLREKSNKKGLQHLQSILLREILGEKEINLASVEQGASIIQHRLQRKKVLLILDDVDKHEQLQAIVGRPCWFGPGSRVIITTRDKQLLASHGVKRTYEVELLNENNALQLLTWKSFKTEKVDPSYKEVLNDVVIYASGLPLALEVIGSNLFGKSIEEWKSAIKQYKRIPGIQILEILKVSFDALEEEQKNVFLDIACCFNRYDLTKVEDILRAHYGDCMKYHIGVLVEKSLIKKKFSWYGRVPRVTMHDLIEDMGKEIVRQESPKEPEKRSRLWLPEDIIHVLEDNRGTSEIEIICLDFPSFDKEEIVVELNTKAFKKMKNLKTLIIRNGKFSKGPKYLPNNLRVLEWWRYPSHCLPSDFHPKKLAICKLPFSCISSFELDGLWKMFVNLRILNFDRCEGLTQIPDVSGLPNLEEFSFECCFNLITVHNSIGFLDKLKILNAFRCKRLRSFPPIKLTSLEKLNLSFCYSLESFPKILGKMENIRQLCLSESSITELPFSFQNLAGLRGLELLFLSPHTIFKVPSSIVLMPELTVIRALGLKGWQWLKQEEGEEKTGSIVSSMVEMLTVSSCNLCDEFFSIDFTWFAHMKELCLSKNNFTILPECIKECQFLRKLDVCGCKHLREIRGIPPNLKHFFAINCKSLTSSSIRKFLNQELHEAGNTVFCLPGKRIPEWFDQQSRGPSISFWFRNKFPDMVLCLIVAPIRSQFFRPEVFINGNECSPYSCYFQKGMHHAYLCDLREIEFRNSPYEVPFENGWNHVNVTCPRCIDTYIYPVKMGIHIFKQEHAMEDVRFTDPFIARENQTMM* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1705 1052 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 924 - -
Gso16g1705 1052 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 924 IPR044974 GO:0006952
Gso16g1705 1052 Gene3D - 9 175 IPR035897 -
Gso16g1705 1052 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Gso16g1705 1052 Pfam NB-ARC domain 198 412 IPR002182 GO:0043531
Gso16g1705 1052 Gene3D - 347 431 IPR042197 -
Gso16g1705 1052 Gene3D Ribonuclease Inhibitor 535 800 IPR032675 -
Gso16g1705 1052 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Gso16g1705 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 441 IPR027417 -
Gso16g1705 1052 SMART till_3 11 151 IPR000157 GO:0007165
Gso16g1705 1052 Pfam TIR domain 11 180 IPR000157 GO:0007165
Gso16g1705 1052 PRINTS Disease resistance protein signature 213 228 - -
Gso16g1705 1052 PRINTS Disease resistance protein signature 289 303 - -
Gso16g1705 1052 PRINTS Disease resistance protein signature 382 396 - -
Gso16g1705 1052 PRINTS Disease resistance protein signature 700 716 - -
Gso16g1705 1052 SMART AAA_5 210 353 IPR003593 -
Gso16g1705 1052 Gene3D - 176 341 IPR027417 -
Gso16g1705 1052 SUPERFAMILY L domain-like 484 907 - -
Gso16g1705 1052 Gene3D Ribonuclease Inhibitor 803 907 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1705 Gso-Chr16 37601566 37607114 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1705 7 785 WRKY Transcription Factor Family AT4G12020 30.855 5.63e-81 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1705 - - gmx:100812810 2028.83