Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1692 ATGGCTTGGGGATCACGTTCCTCTTCCTCTTCCTCCAATTACCATGTGTTCCTCAGCTTCAGAGGTGAAGACACACGTCATGGTTTTACTGGCCATCTCTACAACACTCTTCAGAGCAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAAAGAGGGGAGCAAATAACACCAGCACTTATGAAGGCAATTGAAGATTCCAGAGTTGCCATCACTGTGCTCTCTGAACACTATGCTTCTTCCTCGTTTTGTTTAGATGAACTTGCAACCATCCTTCACTGTGACCAGAGGAAACGGTTGTTGGTTATACCGATCTTTTATAAGGTGGATCCTTCTGATGTGAGACACCAGAAAGGTAGTTATGGAGAAGCATTGGCAAAGCTTGAGAGGAGGTTCCAGCATGACCCGGAGAAGTTGCAGAACTGGAAGATGGCTCTGCAGCGAGTAGCTGACTTGTCTGGCTATCATTTCAAAGAAGGAGAAGGATATGAATACAAGTTTATTGAGAAGATTGTTGAGGAGGTCTCTAGGGTGATTAATCTTTGTCCTTTACATGTTGCGGATTACCCAGTTGGACTAAAGTCACGAGTGTTACATGTAAGGAGACTTTTGCATGCTGGATCTGATCATGGTGTCCACATGATAGGGATTCATGGAATGGGCGGGGTAGGAAAATCAACACTTGCTCGAGCTGTCTATAATGAATTGATAATTGCTGAGAAGTTTGATGGTTTGTGTTTTCTTGCAAATGTGAGGGAAAACTCAAACAAACACGGGTTAGAACACCTCCAAGGAAAGCTGCTTTTAGAAATACTCGGAGAGAAGAGCATCAGCTTAACAAGTAAGCAACAAGGAATTTCAATCATACAGTCTAGGCTCAAGGGAAAGAAGGTTCTCTTGATTATAGATGATGTTGACACACACGACCAATTGCAAGCAATTGCTGGAAGACCTGATTGGTTTGGTCGCGGCAGCAAAATCATCATCACAACTCGGGACAAACAATTGCTAGCATCTCATGAAGTTAATAAAACATATGAAATGAAGGAATTGGATGAGAACCATGCTCTTCAGTTGCTTACATGGCAAGCTTTTAAAAAAGAAAAAGCTGATCCAACTTACGTGGAGGTCTTGCATCGCGTAGTAACTTATGCTTCTGGTCTTCCATTGGCGTTGGAAGTAATAGGTTCCCACTTGGTTGGAAAAAGTATACAAGAATGGGAATCTGCCATCAAACAATATAAAAGAATTGCCAAGAAGGAAATTCTAGATATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAAAGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGATGGAAATTGACAGAGCTTGAACATGTTTATGATGACTGCATGAAAAATCATATTGGGGTGTTGGTTGAAAAATCTCTAATAGAGGTTAGATGGTGGGATGATGCAGTTAACATGCATGACTTGATTCAGGACATGGGCAGGCGAATAGACCAACAAGAATCCTCAAAAGAGCCCAGGAAGCGAAGGAGATTATGGTTAACAAAGGATATAATTCAAGTTTTAGAAGAGAACTCGGGAACGAGTGAAATTGAAATCATATCTCTGGATTTATCCTTATCCGAGAAAGAAACAACAATAGAATGGAATGGAAACGCCTTCAGAAAGATGAAAAACCTTAAAATACTTATTATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATATTCCAGAAAGTTTAAGAGTACTGGAATGGCACGGGTATCCTTCTAGTTGTTTACCATCTAATTTTCATCCGAAGGAACTTGCCATATGCAAGTTACCTCAAAGTTGCATTACGTCATTTGGGTTCCAAGGCTCAATGAAGAAGTTCAGGAATCTAAAGGTTTTGAATTTTGAACAGTGTGAATTTTTAACAGAGATACCTGACGTATCTGTTCTCCTAAATTTGGAAGAACTTTCATTTCATCGGTGTGGGAATTTAATTACAGTCCACGACTCAATTGGTTTTCTAAATAAACTTAAAATATTGGGTGCTACAAGGTGCAGGAAGCTTACCACATTTCCACCTCTCAACTTGACCTCTCTTGAAAGACTTGAACTTTCATGTTGTTCCAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGAAAAACTTATTGAAGCTTGAATTGTCTGGCCTTCTTGGTGTAAAAGGATTGCCAGTTTCATTTCAAAATCTTGTTGGACTCCAAAGTTTAGACCTGGATGATTGTGAAAATTTTTTGTTACCAAGTAACATTATTGCCATGATGCCTAAACTGTCTTCATTGAAGGCTATAAGTTGCAAGGGGTTGCAATGGGTAAAATCAGAAGAGGGTGAAGAAAACGTGGGCTCAATAGCATGTTCAAATGTTGATTACATCATTGTCGATTATTGCAACCTGTATGATGATTTTTTTCCAACAGGTTTCATGCAGCTTCATCATGTGAAAACTTTAAGCCTAAGGGAGAATAATTTCACATTCCTTCCTGAATGCATCAGAGAATTGCAATTTTTAACAACACTTGATGTGAATGGTTGCTATCATCTTCAGGAAATTAGAGGGGTTCCACCAAACTTAATAGATTTCTCGGCAATCGATTGTATATCCTTGTCTTCCTCGAGTACAAGCATGTTTTTAAATCAGGAATTGCATGAGGCTGGACAAACTAAGTTTGGCTTTCCAGGAGCAACTATTCCAGAGTGGTTCAATCACCAAAGTAGGGGAACTTCAAGTTCTTTCTGGTTTCGTAATGAATTCCCTGACAATGTTCTTTGTCTTCTTGTAGCACGTGTGGAACGCATAGGTGATAATGATATTCCCATGCCCGTGGTGTTACTCAATGGCGAACTTCTTATTGATCGTGATCATCACGTCCAACTAGGAAAAAAGAAATGGGATTATACATATCTATTTGACCTAAAATCAGTTTTAGATGAGCTTGTTGATCTATCTGAAGTGGTATTAGAAAAGGAATGGAACCATGTGGAAATTACATACGCGGGTCAGATAGAGACCTCACTGGTTAAAGCAACCGGAATCCATGTATTCAGACAGGATGATATTCGATATGATGATCCCTATGGCAAGAGAAAATTAGAGCATGATCTCAGTTCTGAATCACAACCACTCAATAAAAAGCCTAGCATGTTATCGAGGTTGTTTTGCAGGTTATCGAGGTGGGTTGGCCCTGAAAGAATTATAAATCTTCTGGGGAATGCTGCAGATGGAGCTTTATTTACTAATGCCGAGAGGAGATATAGCCATATTTCTATGGTCTCTTGTAGGCGATGCGGCGTGTTGGAGGAGACATGTCTGCATGCTCTTCGAGATTGTCCAGAGGTGGCTGCATTTTGGAGAAGTGTGTTACCTAAGAAATTAGCACCAAAGTTTTTTAATGGTGATGATGTGACAGTGTGGCTGGAAACAAATTTATCTTTTTCAGAGGCAGCTGTTTTTTGGCCAGCTTTTTTTGGGATTGCAGTGGATCTGTTGTGGGAATCCCGCAACGACCTTGTGTTCTATCAAAATGGTCAGACTTGGGCATATGTACATCTTAGGGCTACAGATATTGTCTTTAAGCGCTATAAAGATTATATGAGAGCCCGTGCTTCTCACAATTTGATGACGAGGAATCTCTTGAAGTGGAGGAGGCCTTTGCCCCTTTCACATGGGCATTGGTTGTTGAGTCTAAATGTGAGTGGTGCCTATGATCCCTCTTCAGGTACTGCTGCATGCGGAGGTATATTCAGAGACTACCATGATAGATTCGTGCTTGGGTTTTCGGTGAAGCTTGGGGAATGTTGGTCAAATGATGAGGGTGAAATATGGGGTATTTATCATGGTATGAAGATTGCAAGGAAGTATGATATTTGGGGTTTATTTCGTGATATTCTAAGGCAGCATAGCGATAAACATAATGTATTTGACTATATTCGAATAAGTCCTAAGATTGCAAGGCAGCATGAATTTGGTAAAATTGTAGTGGTATCGGGCTCTGAGAAAGCTATTGGGTTTGTGTCAGATGGATGCCCTACATCCACATCTACATCTACATCGATGCAGCATTGTTTCCCATTCTGTGATGAGTTGAAAGCTCTAACGTCTGCTACAAATCACTCATACTTCATGTACGCACCGGACTCATACTTGATGCACACACCGGACGATCCTGCTGCTTATTCCTTTGTCAAATTCGGTTTATCCATGAAACAACAGGCTGCGTCAATTTTTTCGGCTTGTCCCTCCTTTTGCCAACCTTTTGTTAGTGAATACATATAA 4317 0.4017 MAWGSRSSSSSSNYHVFLSFRGEDTRHGFTGHLYNTLQSKGIHTFIDDEKLQRGEQITPALMKAIEDSRVAITVLSEHYASSSFCLDELATILHCDQRKRLLVIPIFYKVDPSDVRHQKGSYGEALAKLERRFQHDPEKLQNWKMALQRVADLSGYHFKEGEGYEYKFIEKIVEEVSRVINLCPLHVADYPVGLKSRVLHVRRLLHAGSDHGVHMIGIHGMGGVGKSTLARAVYNELIIAEKFDGLCFLANVRENSNKHGLEHLQGKLLLEILGEKSISLTSKQQGISIIQSRLKGKKVLLIIDDVDTHDQLQAIAGRPDWFGRGSKIIITTRDKQLLASHEVNKTYEMKELDENHALQLLTWQAFKKEKADPTYVEVLHRVVTYASGLPLALEVIGSHLVGKSIQEWESAIKQYKRIAKKEILDILKVSFDALEEEEKKVFLDIACCFKGWKLTELEHVYDDCMKNHIGVLVEKSLIEVRWWDDAVNMHDLIQDMGRRIDQQESSKEPRKRRRLWLTKDIIQVLEENSGTSEIEIISLDLSLSEKETTIEWNGNAFRKMKNLKILIIRNGKFSKGPNYIPESLRVLEWHGYPSSCLPSNFHPKELAICKLPQSCITSFGFQGSMKKFRNLKVLNFEQCEFLTEIPDVSVLLNLEELSFHRCGNLITVHDSIGFLNKLKILGATRCRKLTTFPPLNLTSLERLELSCCSSLENFPEILGEMKNLLKLELSGLLGVKGLPVSFQNLVGLQSLDLDDCENFLLPSNIIAMMPKLSSLKAISCKGLQWVKSEEGEENVGSIACSNVDYIIVDYCNLYDDFFPTGFMQLHHVKTLSLRENNFTFLPECIRELQFLTTLDVNGCYHLQEIRGVPPNLIDFSAIDCISLSSSSTSMFLNQELHEAGQTKFGFPGATIPEWFNHQSRGTSSSFWFRNEFPDNVLCLLVARVERIGDNDIPMPVVLLNGELLIDRDHHVQLGKKKWDYTYLFDLKSVLDELVDLSEVVLEKEWNHVEITYAGQIETSLVKATGIHVFRQDDIRYDDPYGKRKLEHDLSSESQPLNKKPSMLSRLFCRLSRWVGPERIINLLGNAADGALFTNAERRYSHISMVSCRRCGVLEETCLHALRDCPEVAAFWRSVLPKKLAPKFFNGDDVTVWLETNLSFSEAAVFWPAFFGIAVDLLWESRNDLVFYQNGQTWAYVHLRATDIVFKRYKDYMRARASHNLMTRNLLKWRRPLPLSHGHWLLSLNVSGAYDPSSGTAACGGIFRDYHDRFVLGFSVKLGECWSNDEGEIWGIYHGMKIARKYDIWGLFRDILRQHSDKHNVFDYIRISPKIARQHEFGKIVVVSGSEKAIGFVSDGCPTSTSTSTSMQHCFPFCDELKALTSATNHSYFMYAPDSYLMHTPDDPAAYSFVKFGLSMKQQAASIFSACPSFCQPFVSEYI* 1439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1692 1438 SUPERFAMILY "Winged helix" DNA-binding domain 421 526 IPR036390 -
Gso16g1692 1438 Pfam TIR domain 13 177 IPR000157 GO:0007165
Gso16g1692 1438 PRINTS Disease resistance protein signature 215 230 - -
Gso16g1692 1438 PRINTS Disease resistance protein signature 293 307 - -
Gso16g1692 1438 PRINTS Disease resistance protein signature 386 400 - -
Gso16g1692 1438 PRINTS Disease resistance protein signature 695 711 - -
Gso16g1692 1438 Gene3D - 7 183 IPR035897 -
Gso16g1692 1438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 445 IPR027417 -
Gso16g1692 1438 CDD RNase_H_like 1243 1299 IPR044730 -
Gso16g1692 1438 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Gso16g1692 1438 Pfam Reverse transcriptase-like 1244 1304 IPR002156 GO:0003676|GO:0004523
Gso16g1692 1438 Gene3D Ribonuclease Inhibitor 500 903 IPR032675 -
Gso16g1692 1438 Pfam NB-ARC domain 203 418 IPR002182 GO:0043531
Gso16g1692 1438 SMART AAA_5 212 348 IPR003593 -
Gso16g1692 1438 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 918 IPR044974 GO:0006952
Gso16g1692 1438 SUPERFAMILY L domain-like 551 889 - -
Gso16g1692 1438 Gene3D - 184 347 IPR027417 -
Gso16g1692 1438 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 918 - -
Gso16g1692 1438 CDD AAA 209 334 - -
Gso16g1692 1438 Gene3D - 351 435 IPR042197 -
Gso16g1692 1438 SMART till_3 13 153 IPR000157 GO:0007165
Gso16g1692 1438 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1692 Gso-Chr16 37526970 37532255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1692 9 784 WRKY Transcription Factor Family AT4G12020 30.326 9.44e-76 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1692 - - gmx:100807994 2213.34