Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1689 ATGGCTTGGGGATCACGTTCCTCTTCCTCTTCCTCCAATTACGATGTGTTCCTCAGCTTCAGAGGTGAAGACACACGTCATGCTTTTACTGGCCATCTCTACAAAGCTCTTCATGACAAGGGAATCCACACTTTCATTGATGACGAGAAGCTTCAAAGAGGGGAGGAAATAACACCAGCACTTATGGAGGCAATTCAAGATTCCAGAGTTGCCATCACTGTGCTCTCTGAACGCTATGCTTCTTCTTCGTTTTGTTTAGATGAACTTGCAACCATCCTTGACCAGAGGAAACGGTTGTTAGTTATACCGGTCTTTTATAAGGTGGATCCTTCTGATGTGAGATACCAGAAAGGTAGTTATGGAGAAGCATTGGCAAAGCTTGAGACGAGGTACCAGCATGACCCGGAGAAGTTGCAAAAATGGAAGATGGCTCTGAAGCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGAGGGAGATGGATATGAATTCAATTTTATTGAGAAGATTGTTGAGCAGGTATCTAGGGAGATTAATCCTCGTACTTTACATGTTGCGGATTACCCGGTTGGACTAGAGTCACGAGTGCTAGATGTAAGGAGACTTTTGGATGCTGGATCTGATGATGGTGTCCACATGATAGGGATTCATGGAATGGGCGGGGTAGGAAAATCAACACTTGCTCGAGCTGTCTATAATGAATTGATAATTGCTGAGAAGTTTGATGGTTTGTGTTTTCTTGCAAATGTGAGGGAAAACTCAAACACACACCGGTTAGAACACCTCCAAGAAAAGCTGCTTTTAGAAATACTCGGAGAGAAGAACATCAGCTTAACAAGTGAGGACGAAGGAATTTCAATCATACAGTATAGGCTCAAGGGAAAGAAGGTTCTCTTGATTCTAGATGATGTTAACACACATAAGCAATTACAAGCAATTGGAAGACGTGATTGGTTTGGTCCCGGCAGCAAAATCATCATCACAACTCGGGACAAACAATTGCTAGTATCTCATGAAGTTAATAAAACATATGAGATGAAGGAATTGAATCAGAAAGATGCTCTTCAGTTGCTTACATGGAAAGCTTTTAAGAAGGAAAAAGCTGATCCAACTTACGTGGAGGTCTTGCATCGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGTGTTGGAAGTAATAGGTTCCCACTTATTTAAAAAAAGTATACAACAATGGGAATCTGCCATCAAAAAATATAAAAGAACTCCCACGAAGGAAATTTTTGATAAACTTAAAGTAAGCTATGATGCTTTGGATGAAGAAGAGCAGAAAGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGATGGAAATTGACAGAGGTTGAACATATACTTCGTGGACGTTATGATGACTGCATGAAAGATCATATTCGGGTGTTGGTTGAAAAATCTCTAATAGATATCGATGTTAGTGGTTGGGATGATGTAGTTACCATGCATGACTTGATTCAGGACATGGGCAGGCGAATTGACCAACAAGATTCCTCAGAAGAGCCATGGAAGCGAAGGAGATTATGGTTAACAAAAGATATAATTCAAATTTTAGAAAACAACTCGGGAACTAGTGAGATGGAAATCATATGTCTGGATTTCTCCTTATCCGAGAAAGATGCAACAATAAAATGGAATGGAGATGCCTTCGAAAAGATGAAAAACCTGAAAATACTTATTATTAGATATGGTAAATTTTCCATAGGTCCCAATTATTTTCCAGAAAGTTTAAGAGTACTGGAATGGCACCGGTATCCTTCTGATTGTTTACCATCTAATTTTCCTCCGAAGGAACTTGCCATATGCAAGTTACCTCAAAGTTGCATTACGTCATTTTGGTTCCATGGCTCAAGGAAGGGGTTCCCGAATCTAAAGGTTTTGAATTTTAAAAATTGTGATTTTTTAACAGAGATACCTGACGTATCTGTTCTCCAAAATTTGGAAGAACTTTCATTTGAGGGGTGTCGAAATTTAACTACAGTTCACCCTTCAATTGGTTCTCTAAATAAACTTAAAATATTGGATGCTAAATATTGCAGCAAGCTTACCACATTTCCACCTCTCAACTTGACCTCTCTTGAAAAACTTGAACTTTCAGATTGTTCCAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGAAAAACTTACCGAAGCTTCATTTGAGAAGCCTTCGCATAAAAGAATTGCCAGTTTCATTTCAAAATCTTGTTGGACTCGAGACTTTATCCCTGTATTATTGTGGAATTCTTTTGTTACCAAGTAGCATTGTCAAGATGCCTAAACTGTCTTCATTGAAGGCTCTCGGTTGCAAGGGGTTCCAATGGGTAAAATCAGAAGAGGGTGATGAAAAAGTGGGAATAGTAGATGACTTCATTGTCGATGGTTGCAACCTGTATGATGATTTTTTTTCAACAGGTTTCATGCAGCTTCATCATGTGAAAACTTTAATCCTAAGGGAGAATAATTTCACATTCCTTCCTGAATGCATCAGAGAATTGCAATTTTTAACAACACTTGATGTGAATGGTTGCTATCATCTTCAGGAAATTAGAGGGGTTCCACCAAACTTAATAGATTTCTCGGCAATCGAATGTATATCCTTGTCTTCCTCGAGTACAAGCATGTTTTTAAATCAGGAATTGCATGAGGCTGGACAAACTAGATTTTGCTTTCCAGGAGCAACTATTCCAGAGTGGTTCAATCACCAAAGTAGGGGAACTTCAAGTTCTTTCTGGTTTCGTAATGAATTCCCTGACAATGTTCTTTGTCTTCTTGTAGCACGTGTGGAACTGTTATATGTAGATGATGATGAAATTCCCGTGCCCATGCCCATGGTGTTCCTCAATGGCGAACTTTTTTTTAAAGGTTTTGAACTTACTGATTATGGGCTCGGAGTAAGAAAGGGGAAATTGGATTATACATATCTATTTGACCTAAAATCAGTTTTTGAGCTTGATGATCTATCTGAAGTGGGTTTAGAAAAGGAATGGAACCATGTGGAAATTACATACGCAGGTATGATGGAGACCTCACTGGTTAAAGCAACCGGAATCCATGTATTGAGACAGGATGATATTCGATATGATGATCCTTATTACGGCAAGAGAAAATTAGAGCATGATCTCAACAGTTCTGAATCACAACCACTCATTAAAAAGCCTAGGTTGTTTTGCAGGTTATCGAGGTGGGTTGGCCCTGAAAGAATTATAAATATTCTGGGGAATGCTGCAGATGGAGCTTTATTTACTAATGCCGAGAGGAGATTTAGGCATATTTCTATGGACTCTTGTTGGCGATGCGGCCTGTTGGAGGAGACATGTCTGCATGCCCTTCGAGATTGTCCAGCGGTGGCTGAATTTTGGAGAAGTGTGTTACCTAAGAAATTAGCACCAAAGTTTTTTAATGGTGATGTGACAGTGTGGCTGGAAAGAAATTTATCTTTTTCAGAGGCAGGTTTTTTTTGGCCAGCTTTTTTTGGGATTGCAGTGGAACTGTTGTGGCAATTCCGCAACCACTATGTGTTCTATAAAAATGACACTGTAGGTCTTAGAGATATGAGATATATTGTCTTTAAGCGGTATGAAGATTATATGAGAGCCCATGCTTCTCACAATTTGATGACGAGGAATCTCTTGAAGTTGAAGCGCGCAAATGCAGAGGATTGGTTGTTGAGGCTAAAGGTGGGAGGTGCCTATGTTCCCTCATCAGGTACTGCTGCATGCGGAGGTATATTCAGAGACAACAATGATAGATTCGTGCTTGGGTTTTCGGTTAAGCTTGGGGAATGTTTGTCGATTGATGAGGCTGAAATATGGGGTATTTATCATGGTATGAAGATTGCAAGGAAGTATGATATTTGGGGTTTATATCGTCATATTCTAAGGCTGCATAGCATTCCAATCAGTCTTAAGCTTGCAAGGCAGCATGATTTTGGTAAAATTGTAGTGGCATCGGGCTCTGAGAAAGCTATTGGGTTTGTGTTAGATGGATGCCCTCCATATATATCTCCATCTACATCTACATGTACATCGCTGCAGCATTGTTTCCCATTCTGTGATGAGTTGAAAGCTCTAACCTCTGCTACAAATCACGTATACTTCTATAAAAGTGATGCTGCTGATTCCTTTGCCAAATTCGGTTTATCCATGAAACGGCTGGCTCCGAAAATTTTTCCTACTTGTCCCTCTTTTTGCTAA 4230 0.3962 MAWGSRSSSSSSNYDVFLSFRGEDTRHAFTGHLYKALHDKGIHTFIDDEKLQRGEEITPALMEAIQDSRVAITVLSERYASSSFCLDELATILDQRKRLLVIPVFYKVDPSDVRYQKGSYGEALAKLETRYQHDPEKLQKWKMALKQVADLSGYHFKEGDGYEFNFIEKIVEQVSREINPRTLHVADYPVGLESRVLDVRRLLDAGSDDGVHMIGIHGMGGVGKSTLARAVYNELIIAEKFDGLCFLANVRENSNTHRLEHLQEKLLLEILGEKNISLTSEDEGISIIQYRLKGKKVLLILDDVNTHKQLQAIGRRDWFGPGSKIIITTRDKQLLVSHEVNKTYEMKELNQKDALQLLTWKAFKKEKADPTYVEVLHRVVTYASGLPLVLEVIGSHLFKKSIQQWESAIKKYKRTPTKEIFDKLKVSYDALDEEEQKVFLDIACCFKGWKLTEVEHILRGRYDDCMKDHIRVLVEKSLIDIDVSGWDDVVTMHDLIQDMGRRIDQQDSSEEPWKRRRLWLTKDIIQILENNSGTSEMEIICLDFSLSEKDATIKWNGDAFEKMKNLKILIIRYGKFSIGPNYFPESLRVLEWHRYPSDCLPSNFPPKELAICKLPQSCITSFWFHGSRKGFPNLKVLNFKNCDFLTEIPDVSVLQNLEELSFEGCRNLTTVHPSIGSLNKLKILDAKYCSKLTTFPPLNLTSLEKLELSDCSSLENFPEILGEMKNLPKLHLRSLRIKELPVSFQNLVGLETLSLYYCGILLLPSSIVKMPKLSSLKALGCKGFQWVKSEEGDEKVGIVDDFIVDGCNLYDDFFSTGFMQLHHVKTLILRENNFTFLPECIRELQFLTTLDVNGCYHLQEIRGVPPNLIDFSAIECISLSSSSTSMFLNQELHEAGQTRFCFPGATIPEWFNHQSRGTSSSFWFRNEFPDNVLCLLVARVELLYVDDDEIPVPMPMVFLNGELFFKGFELTDYGLGVRKGKLDYTYLFDLKSVFELDDLSEVGLEKEWNHVEITYAGMMETSLVKATGIHVLRQDDIRYDDPYYGKRKLEHDLNSSESQPLIKKPRLFCRLSRWVGPERIINILGNAADGALFTNAERRFRHISMDSCWRCGLLEETCLHALRDCPAVAEFWRSVLPKKLAPKFFNGDVTVWLERNLSFSEAGFFWPAFFGIAVELLWQFRNHYVFYKNDTVGLRDMRYIVFKRYEDYMRAHASHNLMTRNLLKLKRANAEDWLLRLKVGGAYVPSSGTAACGGIFRDNNDRFVLGFSVKLGECLSIDEAEIWGIYHGMKIARKYDIWGLYRHILRLHSIPISLKLARQHDFGKIVVASGSEKAIGFVLDGCPPYISPSTSTCTSLQHCFPFCDELKALTSATNHVYFYKSDAADSFAKFGLSMKRLAPKIFPTCPSFC* 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1689 1409 Pfam Reverse transcriptase-like 1241 1298 IPR002156 GO:0003676|GO:0004523
Gso16g1689 1409 Gene3D - 178 343 IPR027417 -
Gso16g1689 1409 SMART till_3 13 151 IPR000157 GO:0007165
Gso16g1689 1409 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Gso16g1689 1409 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Gso16g1689 1409 Gene3D Ribonuclease Inhibitor 541 714 IPR032675 -
Gso16g1689 1409 SUPERFAMILY "Winged helix" DNA-binding domain 419 529 IPR036390 -
Gso16g1689 1409 PRINTS Disease resistance protein signature 213 228 - -
Gso16g1689 1409 PRINTS Disease resistance protein signature 291 305 - -
Gso16g1689 1409 PRINTS Disease resistance protein signature 383 397 - -
Gso16g1689 1409 PRINTS Disease resistance protein signature 698 714 - -
Gso16g1689 1409 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 914 - -
Gso16g1689 1409 CDD RNase_H_like 1241 1293 IPR044730 -
Gso16g1689 1409 Pfam TIR domain 13 179 IPR000157 GO:0007165
Gso16g1689 1409 Gene3D Ribonuclease Inhibitor 715 911 IPR032675 -
Gso16g1689 1409 SUPERFAMILY L domain-like 554 887 - -
Gso16g1689 1409 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 914 IPR044974 GO:0006952
Gso16g1689 1409 Pfam NB-ARC domain 200 425 IPR002182 GO:0043531
Gso16g1689 1409 Gene3D - 6 177 IPR035897 -
Gso16g1689 1409 Gene3D - 348 432 IPR042197 -
Gso16g1689 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1689 Gso-Chr16 37494838 37500872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1689 9 781 WRKY Transcription Factor Family AT4G12020 32.541 1.68e-84 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1689 - - gmx:100807994 2130.91