Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1688 ATGACAATACCATTAATTCAATTATGTTTGGAATTTCCATGTCACATTTTTCTTGTTTTGTTCTTCTTGCTTGGTCATACAAGCTCACAATCTTTGTATGATCAAGAACATGCAGTTTTGCTTAACATAAAGCAATACCTGCAAGACCCTCCATTCCTCTCCAACTGGACTTCAACTTCCTCCTCTCACTGTTCATGGCCAGAGATCATATGCACCACAAACTCAGTCACTTCCCTCACTCTCTCCCAATCCAACATCAACAGAACAATACCATCCTTCATCTGTGGCCTCACCAACCTCACACACCTTGACTTCAGCTTCAACTTCATCCCTGGTGGCTTCCCCACACCCCTCTACAACTGCTCCAAGTTGGAGTACCTTGACCTTTCAGGGAACAACTTTGATGGCAAGGTTCCTCATGACATTGATCAATTGAGTGCTAATTTGCAATATCTCAACCTTGGTTCCACCAATTTCCATGGTGATGTTCCTTCTAGTATTGCAAAGTTGAAGCAATTGAGACAAATTAAACTACAGTATTGCTTATTGAATGGATCTGTTGCTGGTGAGATTGATGACTTGTCCAACCTTGAGTACTTGGACTTGTCCTCTAACTTCATGTTTCCTGAATGGAAGTTACCTTGGAACTTGACCAAGTTCAACAAATTGAAGGTGTTTAATTTGTATGGCACCAATTTGGTTGGGGAAATCCCTGAGAACATTGGAGATATGGTGGCCTTGGACATGCTGGATATGTCAAATAATAGCTTAGCTGGAGGAATTCCAAGTGGTTTGTTCTTGCTGAAGAATCTGACCTCACTCCGTCTTTATGCAAATAGTCTTTCTGGGGAGATACCAAGTGTGGTCGAGGCATTGAACTTGGCCAACCTTGATCTTGCAAGGAACAATCTTACAGGGAAAATACCTGATATTTTTGGAAAGCTCCAACAGTTATCATGGTTGAGTTTGTCTTTAAATGGCTTGTCAGGTGTGATACCAGAAAGCTTTGGCAATCTTCCAGCTCTCAAAGATTTTCGCGTGTTTTTCAACAACTTATCAGGTACTCTTCCTCCTGATTTCGGCCGTTACTCAAAGCTTGAAACCTTTATGATTGCATCTAATAGTTTCACTGGGAAGTTACCAGACAACTTGTGCTATCATGGGATGTTACTTAGCTTGTCTGTTTATGACAATAATCTGAGTGGTGAGTTGCCGGAATCACTAGGAAATTGCAGTGGTTTACTGGATTTGAAAGTTCACAATAATGAGTTTTCTGGTAACATTCCTAGTGGTCTTTGGACATCTTTCAATTTGACAAATTTCATGGTGAGCCATAACAAGTTCACTGGTGTGCTTCCTGAAAGGCTATCTTGGAATATTTCAAGGTTTGAGATAAGTTACAACCAGTTTTCTGGTGGAATTCCAAGTGGAGTGTCATCATGGACTAATTTGGTAGTGTTTGATGCAAGTAAGAACAATTTTAATGGAAGTATTCCACGACAGCTAACAGCTCTTCCTAAGTTAACAACCTTGTTGCTTGATCAGAACCAACTCACTGGGGAGCTTCCATCAGATATAATATCATGGAAATCCTTAGTAGCTCTAAATTTGAGCCAAAACCAACTCTATGGACAAATCCCTCATGCAATTGGTCAGTTACCTGCCCTTAGTCAACTTGATCTATCAGAAAATGAATTCTCTGGTCAAGTTCCTTCTCTACCCCCTAGACTCACCAATCTCAATTTGTCTTCTAACCATTTGACCGGGAGGATTCCAAGTGAATTTGAAAATTCTGTGTTTGCTAGTAGCTTTTTGGGCAATTCTGGTCTTTGTGCTGATACCCCAGCACTGAACCTTACCTTATGTAATTCTGGCCTTCAAAGAAAAAATAAAGGCTCATCTTGGTCTGTTGGTTTGGTTATAAGTTTGGTGATAGTAGCCTTGTTACTGATCCTTTTGCTATCACTCTTGTTTATTAGATTTAACAGAAAAAGAAAGCATGGATTGGTTAACTCATGGAAGCTCATTTCCTTTGAGAGGCTTAATTTCACAGAATCCAGCATTGTCTCATCAATGACAGAACAAAACATCATTGGTAGTGGTGGATATGGTATAGTATACCGCATTGATGTTGGTTCAGGCTATGTTGCTGTGAAAAAGATTTGGAATAACAGAAAGTTAGAAAAGAAGCTCGAGAACTCTTTCCGGGCAGAAGTTAGAATACTGAGCAATATTCGTCATACCAACATTGTGAGATTGATGTGTTGTATCTCTAATGAGGATTCTATGCTCCTTGTGTATGAGTATCTGGAAAATCATAGCCTAGATAAGTGGCTGCACAAGAAGGTTAAGTCAGGTTCAGTAAGTAAAGTGGTCCTTGATTGGCCAAAGAGGTTGAAAATAGCCATTGGAATTGCTCAAGGTTTGAGCTATATGCACCATGACTGTTCACCACCTGTGGTTCATAGAGATATAAAAACAAGCAACATCCTTTTGGATACTCAATTCAATGCAAAAGTTGCTGATTTTGGACTCGCTAAGATGCTAATCAAGCCAGGGGAACTGAACACCATGTCAGCAGTGATTGGCTCATTTGGCTATATTGCTCCAGAATATGTTCAAACAACACGAGTTAGTGAAAAGATTGATGTGTTTAGCTTTGGGGTAGTCCTATTGGAACTGACAACTGGTAAAGAAGCAAATTATGGAGACCAACACTCATCTCTTTCTGAATGGGCGTGGCGTCACGTTCTGATTGGAGGAAATGTTGAAGAATTGCTAGACAAAGATGTCATGGAAGCCATTTACTCAGATGAAATGTGCACTGTTTTCAAACTTGGGGTCCTGTGCACAGCAACACTGCCTGCAAGTAGGCCTTCAATGAGGGAGGCCCTACAAATATTGCAAAGCTTAGGAGAACCATTTGCTTATGGAGATCAGAAGAATTTTGGCCACTACTATGATGCTATTCCCCTTCTCAAGAGTTCAGAAAAGGAAACTAGGTTGGATGTTGTTGATCATAGCGAATGA 3030 0.4036 MTIPLIQLCLEFPCHIFLVLFFLLGHTSSQSLYDQEHAVLLNIKQYLQDPPFLSNWTSTSSSHCSWPEIICTTNSVTSLTLSQSNINRTIPSFICGLTNLTHLDFSFNFIPGGFPTPLYNCSKLEYLDLSGNNFDGKVPHDIDQLSANLQYLNLGSTNFHGDVPSSIAKLKQLRQIKLQYCLLNGSVAGEIDDLSNLEYLDLSSNFMFPEWKLPWNLTKFNKLKVFNLYGTNLVGEIPENIGDMVALDMLDMSNNSLAGGIPSGLFLLKNLTSLRLYANSLSGEIPSVVEALNLANLDLARNNLTGKIPDIFGKLQQLSWLSLSLNGLSGVIPESFGNLPALKDFRVFFNNLSGTLPPDFGRYSKLETFMIASNSFTGKLPDNLCYHGMLLSLSVYDNNLSGELPESLGNCSGLLDLKVHNNEFSGNIPSGLWTSFNLTNFMVSHNKFTGVLPERLSWNISRFEISYNQFSGGIPSGVSSWTNLVVFDASKNNFNGSIPRQLTALPKLTTLLLDQNQLTGELPSDIISWKSLVALNLSQNQLYGQIPHAIGQLPALSQLDLSENEFSGQVPSLPPRLTNLNLSSNHLTGRIPSEFENSVFASSFLGNSGLCADTPALNLTLCNSGLQRKNKGSSWSVGLVISLVIVALLLILLLSLLFIRFNRKRKHGLVNSWKLISFERLNFTESSIVSSMTEQNIIGSGGYGIVYRIDVGSGYVAVKKIWNNRKLEKKLENSFRAEVRILSNIRHTNIVRLMCCISNEDSMLLVYEYLENHSLDKWLHKKVKSGSVSKVVLDWPKRLKIAIGIAQGLSYMHHDCSPPVVHRDIKTSNILLDTQFNAKVADFGLAKMLIKPGELNTMSAVIGSFGYIAPEYVQTTRVSEKIDVFSFGVVLLELTTGKEANYGDQHSSLSEWAWRHVLIGGNVEELLDKDVMEAIYSDEMCTVFKLGVLCTATLPASRPSMREALQILQSLGEPFAYGDQKNFGHYYDAIPLLKSSEKETRLDVVDHSE* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1688 1009 SMART serkin_6 692 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1688 1009 ProSitePatterns Protein kinases ATP-binding region signature. 698 720 IPR017441 GO:0005524
Gso16g1688 1009 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 1001 - -
Gso16g1688 1009 Pfam Protein kinase domain 694 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1688 1009 SUPERFAMILY Protein kinase-like (PK-like) 686 968 IPR011009 -
Gso16g1688 1009 Gene3D Phosphorylase Kinase; domain 1 671 769 - -
Gso16g1688 1009 Gene3D Ribonuclease Inhibitor 210 353 IPR032675 -
Gso16g1688 1009 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 1001 - -
Gso16g1688 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Gso16g1688 1009 SUPERFAMILY L domain-like 219 592 - -
Gso16g1688 1009 ProSiteProfiles Protein kinase domain profile. 692 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1688 1009 Gene3D Ribonuclease Inhibitor 35 147 IPR032675 -
Gso16g1688 1009 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Gso16g1688 1009 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Gso16g1688 1009 Gene3D Transferase(Phosphotransferase) domain 1 770 982 - -
Gso16g1688 1009 Gene3D Ribonuclease Inhibitor 354 622 IPR032675 -
Gso16g1688 1009 SMART LRR_typ_2 244 268 IPR003591 -
Gso16g1688 1009 SMART LRR_typ_2 553 580 IPR003591 -
Gso16g1688 1009 SMART LRR_typ_2 505 529 IPR003591 -
Gso16g1688 1009 SMART LRR_typ_2 315 338 IPR003591 -
Gso16g1688 1009 Gene3D Ribonuclease Inhibitor 148 209 IPR032675 -
Gso16g1688 1009 SMART LRR_sd22_2 97 129 - -
Gso16g1688 1009 SMART LRR_sd22_2 194 219 - -
Gso16g1688 1009 SMART LRR_sd22_2 268 294 - -
Gso16g1688 1009 Pfam Leucine rich repeat 75 134 IPR001611 GO:0005515
Gso16g1688 1009 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Gso16g1688 1009 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Gso16g1688 1009 SUPERFAMILY L domain-like 34 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1688 Gso-Chr16 37486079 37489813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1688 31 1007 Receptor kinase-like Gene Family AT5G25930 49.899 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso16g1688 Pkinase 4.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1688 - - gmx:100813894 1910.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1688 16 37486079 37489813 Gso9g1330 9 37015733 37019521 GST