Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1672 ATGATAGGTGGGATGGGTGATGAACCTCATGCAGGTTCTTTCGGGCTGGAGGAAATTTATGGGGGGGTTCCGACCCCCATGAGAAGGAAAAGGAAATACAGGACAAAGAAAAAGGAATATCAAGGATGGGGATCGACTTCCCTTATTTGGTTTCTCGAATCCATTGGTAGAGATACCAGCACCGAGATAACTCAAAGTGAGGTTGCAAATATTGTAATGGAGTATGTTAAGCAGCACAACCTCTTTCATAAGACAAAAAAGAAGAGAATTGAGTGTGATGAGAAGCTGCATTTGCTGTTTGGGAGGAAGACCATTAGCCGGCTGAAAATCAATGACTTGCTTGAGTCACACTTTGCGGAGAACTGTGAGGAGTCCTCTGATGGTATTTTCTTTGACTCAGAAGATGATGAGAGTGCCTTGACAGCTTGTGAAACCCCGAGAACAGCACCTTCGGAGAGGAAGAGTCAACCAAAGAAACCAGCTTTTGAAAAAACAAGGAGCTGTTTTGCTGGCATTGTTCCTGCCAACATCAAGCTTGTTTATTTGAAGAGGAGTCTAGTTGAGGACCTTTTAAAGGACCCTGAAACTTTTGAGACTAAAGTAGTTGGAAGCTTCATAAGAATCAGATGTGACCCAAATGATTACCTTCAGAAAAACTCACACCAGCTTTTGCAAGTCACAGGTATGAAGAAGAGTTCTGAAGTAAAGGGGGAAATTCACCTTCAAGCTTCTGGTTTCATTAAAGACATCAGGATTCAAATGCTTTCAGATGATAATTTCTCTGTGGAGGAGTGTGAGGATTTGCACCAAAGAGTAAAAGATTGCTTGGTCAAGAGACCTATGATTGTGGATATGGAGCAGACAGCTAGAGTATTGCATGAGGATATGACTAGGCATTGGCTTGCAAGAGAACTTATTCTGCTACAAAATCTTATTGATCAAGCTAATGAAAAGGGTTGGCGCAGAGAACTGGACGAGTACCTACGAAGAAGGGAGAAGCTTCAGAGTCCTGACGAGCAGGAACGGTTATTGCGTGAATTTCCTCAAGTTATTGCAGATGAGCAAAAATCAGAATCTACAACACCAGATGTTCTAGATAAAAACGTAGAAAACAATTTACAGGAGTTCTGGCAGGCTACCTATACAAAATCATCTTCAGTGACTGAGGTCCCAAATGCTGTTGCAAATACAAAATTGGATATTGCTGATCTTGTAAAACAACAGAGAAATTCACCAAAGTCAATGTCCATTCCCCGCAGAGCACCAGAAGTTCCTCTTTTGGATATGACAAATAATAGCACTATGTTGAATTGCATTTCTCCAGACACCACAGAGCACCAATCCCGTGGCTTATCTGTCCAACTGCCACCATTTCAACAAACAAACTTTGCATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGTTATAAGGCTAAGTGATGGCTTACCTGTCCAACAGCCACCAGAGCAACAAACAGACTTTGCATATAACAATGGAACATCTAAGCCAGTCGAATCACAGGAAGGGAAGATCTCTCAAGCACTGCCCAACAAACAGATACGGCCATCTCAGCTTGAGGTTATAGAGCTATGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGGCATGTCTAAGCCAGCCGAATCACAGGAAGTGAAGATCTCTCAAGCACTGCCCAACAAACAGATACTGCAATCACAGCTCGATGTTATAGAGCTAAGTGATGGCTTACCTGTTCAGCAGCTGCCAGAGCAACAAATAAATTTTGCATATAAGAATGACATGTCTAAGCCAGCTGAATTGCATGAAGTGAAGATCTCTCAAGCACAGTCCAACAAACAAATACAGCCATCTCAGATTCAAGTTATAGAGCTAAGTGATGACGATGATGAAGAAAATGAAAAACCAAGTACTGCAAAACTGGTTCCTTCTGTGCAATCGGATACCTTGATGTGGCATTACAGAGATCCCATGGGAAATGTACAAGGACCATTTTCCTTAATTTCTCTGAAACGTTGGAGTGATGCTGGCTACTTTCCCCGACATTTCAAGGTCTGGAAGTCAGGGAGACAAGTTAGTGATGATGCGGAAAAAGTCCCTCAGCGTCGAAGGCCGACAATATCTGCACGTAGACAACGGGTCGCTACAACTGTTGTTGAGGATGTTAACCTTGTTGATCATGGTGCTGATGAGGTTCGTGAGGAGCCTCAGGTGCCAACTACTGATGATGGAGGTGCAGATACGAAGGGTTTTCCAGGCGGACCCCAAGATACATCAGTGTTGCTGAATTATGTTTATCATGTGGCAGCCTCAGTTTGGACAGGAGAGGAATGTCCTAAGTTGAAGTTGGTATCTCATGGGAGGAAGGTAGAGAAATTTGGAAAGCCTGTACCTGAGATTGAAGGCATAGTAGCTGCTACGGGATTAAGTTCTCTGATTACTTGTTCGTTTGACACTGGTGACAGAGGACTTTTATCTGCTTTTGTCGAGAGGTGGCACAAGGAAACAAGTAGTTTCCATTTACCGATAGGAGAGGTGACTATAACCCTCGATGATGTGGCATCCTTGTTACATCTTCCAATTGTAGGTGCCTTCCATACCTTCGATCCTCTTGATGTAGACCAAGCTGTAGAGTTGTTAGTTGAGTTGTTTGAAGTGAGTACAAAAGAAGCAAAAGATAAGACTAACCAATGCAGAGGGGCGTATGTTCGCCTAGCTTGGCTACGAGACATTTATCGTAGCAAATGTGACGCAAGACAATGGACTTTAGCTGCTCGAGCTTATTTATTGCATCTAGTAGGTTGCACACTCTTTGCTAACAAGAGTGCCACACACATCAATGTGGTATTCTTAGACGCATTTCGTGACCTCAGCCAATCCAGAAGTTATTCATGGGGAGCAGCTGCACTAGTCCATATGTACGAGAATTTGAATGATGCGTCAAAACATACGACAAAATATCTTGCAGGTTATATCACTCTATTACAGGTTTATAATTTTGTGCAGTGTTGGATTTACGAGCATTTTCCTACAATCGCTTCCACTGTTGTTGATGACGATTATCATGAAAGGAAACCACGTGCTTGTCGATGGAAGTCTGGGAAGACATTACCAGTGTTGACGTATCGTAAGCACTTGGATAGATTGACGTCAGATGTTGTTTGTTGGATTCCTTATGGTGAACACCGTTCATCTAGAGAATTTGAGCTCGTCTCATTATTTTCCGGACATATTAGATGGGGTTCATCTATTGTCGTACACCAATCAGAGAGGGTAGTGCGACAGTTCGGTTATGTGCAGACCATTTCTCCATACCCAGCTACTCCATCCTTATCTATAGAGGAGATTGATGATAGATGGCTTCATTTTTCAGAATACCTTGCACCGGTTGGACAAATTTGTAGTGCTCTTGGACAGTGTGCAACAGACTACATGGAGTGGTTCTATAGGATATCTCACCCTTTCATGATTCCAACATAG 3570 0.4272 MIGGMGDEPHAGSFGLEEIYGGVPTPMRRKRKYRTKKKEYQGWGSTSLIWFLESIGRDTSTEITQSEVANIVMEYVKQHNLFHKTKKKRIECDEKLHLLFGRKTISRLKINDLLESHFAENCEESSDGIFFDSEDDESALTACETPRTAPSERKSQPKKPAFEKTRSCFAGIVPANIKLVYLKRSLVEDLLKDPETFETKVVGSFIRIRCDPNDYLQKNSHQLLQVTGMKKSSEVKGEIHLQASGFIKDIRIQMLSDDNFSVEECEDLHQRVKDCLVKRPMIVDMEQTARVLHEDMTRHWLARELILLQNLIDQANEKGWRRELDEYLRRREKLQSPDEQERLLREFPQVIADEQKSESTTPDVLDKNVENNLQEFWQATYTKSSSVTEVPNAVANTKLDIADLVKQQRNSPKSMSIPRRAPEVPLLDMTNNSTMLNCISPDTTEHQSRGLSVQLPPFQQTNFAYKNDMSKPANSHEAKISQALPDKQMWSSQIRVIRLSDGLPVQQPPEQQTDFAYNNGTSKPVESQEGKISQALPNKQIRPSQLEVIELCDDLSVQQPPEQQTNFTYKNGMSKPAESQEVKISQALPNKQILQSQLDVIELSDGLPVQQLPEQQINFAYKNDMSKPAELHEVKISQAQSNKQIQPSQIQVIELSDDDDEENEKPSTAKLVPSVQSDTLMWHYRDPMGNVQGPFSLISLKRWSDAGYFPRHFKVWKSGRQVSDDAEKVPQRRRPTISARRQRVATTVVEDVNLVDHGADEVREEPQVPTTDDGGADTKGFPGGPQDTSVLLNYVYHVAASVWTGEECPKLKLVSHGRKVEKFGKPVPEIEGIVAATGLSSLITCSFDTGDRGLLSAFVERWHKETSSFHLPIGEVTITLDDVASLLHLPIVGAFHTFDPLDVDQAVELLVELFEVSTKEAKDKTNQCRGAYVRLAWLRDIYRSKCDARQWTLAARAYLLHLVGCTLFANKSATHINVVFLDAFRDLSQSRSYSWGAAALVHMYENLNDASKHTTKYLAGYITLLQVYNFVQCWIYEHFPTIASTVVDDDYHERKPRACRWKSGKTLPVLTYRKHLDRLTSDVVCWIPYGEHRSSREFELVSLFSGHIRWGSSIVVHQSERVVRQFGYVQTISPYPATPSLSIEEIDDRWLHFSEYLAPVGQICSALGQCATDYMEWFYRISHPFMIPT* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1672 1189 Pfam Plant mobile domain 850 1178 IPR019557 -
Gso16g1672 1189 Pfam Plus-3 domain 176 272 IPR004343 GO:0003677
Gso16g1672 1189 Gene3D SWIB/MDM2 domain 30 128 IPR036885 -
Gso16g1672 1189 SMART gyf_5 680 732 IPR003169 GO:0005515
Gso16g1672 1189 SMART rtf1 171 274 IPR004343 GO:0003677
Gso16g1672 1189 Gene3D - 173 294 IPR036128 GO:0003677
Gso16g1672 1189 PANTHER OS01G0884500 PROTEIN 8 724 IPR045894 -
Gso16g1672 1189 MobiDBLite consensus disorder prediction 504 539 - -
Gso16g1672 1189 PANTHER OS01G0884500 PROTEIN 8 724 - -
Gso16g1672 1189 ProSiteProfiles GYF domain profile. 679 730 IPR003169 GO:0005515
Gso16g1672 1189 SUPERFAMILY Plus3-like 173 295 IPR036128 GO:0003677
Gso16g1672 1189 SUPERFAMILY GYF domain 667 719 IPR035445 -
Gso16g1672 1189 ProSiteProfiles Plus3 domain profile. 171 297 IPR004343 GO:0003677
Gso16g1672 1189 CDD SWIB-MDM2_like 61 118 - -
Gso16g1672 1189 Pfam SWIB/MDM2 domain 60 118 IPR003121 -
Gso16g1672 1189 MobiDBLite consensus disorder prediction 759 783 - -
Gso16g1672 1189 Pfam GYF domain 682 718 IPR003169 GO:0005515
Gso16g1672 1189 SUPERFAMILY SWIB/MDM2 domain 33 122 IPR036885 -
Gso16g1672 1189 Gene3D - 680 726 IPR035445 -
Gso16g1672 1189 MobiDBLite consensus disorder prediction 505 539 - -
Gso16g1672 1189 ProSiteProfiles SWIB/MDM2 domain profile. 37 120 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1672 Gso-Chr16 37350637 37361528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso16g1672 PMD 1.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1672 - - gmx:100810151 2314.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1672 16 37350637 37361528 Gso9g1306 9 36671385 36680431 GST