Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1670 ATGACACCAACCAGCGGCGAAGGAGCTGAGAAGATGGATGCAGAAGATGGTGTAAACTGCAGTGATTATGAGCATGACATAGAAAATGAAGATTTGTGGGATGGGAATGAAGAAAGTGGAGGGTACTGGTCAGGGATATATGACAGAAACAAGGCTCATACAAAGCCACTTCTTATGAAGGGGACTAACACCACCTCCCAGATTGCTATTATTGGTGCCAACCTCTGCCCTATTGAAAGCCTTGACTATGAGATTTTTGACAATGAAATATTGAAGAATGACTGGAGTTCCAGGAAGAAGGTTCAGATAATCCATTATGTGATGCTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGTACTGGATTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCTGGTTTCAAGCTGTTTATGACCACCAGTCTCATGTCTAAACACAGATATCTTGATGCTTTCTTAGCATATGCTGGTGCGAATATGTGTTTAGCAGCAGCTGCTGCTGCACTTTGTGCTTTCATCGCTCCAGCAGCTGCAGGCTCTGGCATTCCAGAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGGCCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGGCAGGGTGGATCTCGCAAGTATCACTTGACTTGCACTTGGCTTAGATATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCTCTTGAAGAGGCAGCTACATGGTGGCGGAGTGCTCTTCTTTGGAGGACTTTTTTCACAACAGCAGTGGTTGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGCGGGAAATGTGGGCTATTTGGGGAAGGTGGTCTGATAATGTATGATGTTAGTTCAGCCAATATAACATATAGTGCTAGTGGGATATTTGCAGTACTACTAATGGGAGCCATTGCTGGAATTCTTGGAAGCATATATAATTACCTTGTGGATAAGGTTGTTCGGACATATAGCATCATCAATGGAAAAGGTGCATTTTCAAAAATCTCTCTTGTTGTCACAATTGCTCTTTTGACATCATGTTGTTATTATTTCTTGCCATGGATTGCATACTGCATTCCCTGCCCTTCTAATTCGACAGTGATCTGTCCCTCTGTTGATGAGTCTGGAGAATACAAAAACTTTCAATGCCCACCAGGTTACTACAATGATCTTGCTTCTCTGTTTCTAAACACCAATGATGATGCTATTCGCAATCTATTTAGCCCCAGGATAATCAAAGAGTTTCATATTACCAGTTTGTTTATCTACTTTGCTACTATTTACTGTCTTGGGATAATCACTTATGGCATTGCTATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCTGGTGCTGCCTATGGCCGTCTTTTCGGCCGGCTCTTCGAAACGATCACCAAACTCGACAGAGGACTATTTGCCCTACTTGGAGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTGTCTATTTGTGTCATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTAATGTTGGTCTTATTAGTCTCAAAAACTGTGGCAGACAGCTTCAACAAGGGTGTCTATGATCAAATACTTAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAGGAATTTAGTAACACGCGATGTTGTTTCAGGTCCATTGATAACCTTTTCTGGCATCGAAAAGGTTGGGAATATATTGCATGCACTGCATACTACAGGGCATAATGGGTTTCCTGTCATTGATGAACCACCTTTCTCAGATGCACCAGAGTTATGTGGGCTTGTACTGAGGTCTCATTTACTAGTGTTACTGAAGGAGAAGATCTTTTCAAGAGATAGGGGTTTTGCGAATCCAGTGATCTTCCAAAGAATTTCTACTTTGGATTTTGGAAAGGCAGGATCAGGAAAGGAAATCAAACTAGAGGATCTTGATATCCAAGAGGAAGAGATAGATATGTATGTTGATCTCCATCCAATAACTAATGCATCTCCTTACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTTTACCCTGATATCAAGCCTCACAAATGGCAATGA 2325 0.428 MTPTSGEGAEKMDAEDGVNCSDYEHDIENEDLWDGNEESGGYWSGIYDRNKAHTKPLLMKGTNTTSQIAIIGANLCPIESLDYEIFDNEILKNDWSSRKKVQIIHYVMLKWGFALLIGLGTGLVGFFNSFAVENIAGFKLFMTTSLMSKHRYLDAFLAYAGANMCLAAAAAALCAFIAPAAAGSGIPEIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAATWWRSALLWRTFFTTAVVAIVLRVAIQFCATGGKCGLFGEGGLIMYDVSSANITYSASGIFAVLLMGAIAGILGSIYNYLVDKVVRTYSIINGKGAFSKISLVVTIALLTSCCYYFLPWIAYCIPCPSNSTVICPSVDESGEYKNFQCPPGYYNDLASLFLNTNDDAIRNLFSPRIIKEFHITSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGAAYGRLFGRLFETITKLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQILKIKGLPYLEAHAEPYMRNLVTRDVVSGPLITFSGIEKVGNILHALHTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKEKIFSRDRGFANPVIFQRISTLDFGKAGSGKEIKLEDLDIQEEEIDMYVDLHPITNASPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPDIKPHKWQ* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1670 774 Gene3D Clc chloride channel 101 579 - -
Gso16g1670 774 Gene3D - 580 758 IPR046342 -
Gso16g1670 774 PRINTS Chloride channel signature 188 207 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g1670 774 PRINTS Chloride channel signature 252 271 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g1670 774 PRINTS Chloride channel signature 478 498 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g1670 774 PRINTS Chloride channel signature 510 526 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g1670 774 PRINTS Chloride channel signature 528 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g1670 774 PRINTS Chloride channel signature 566 580 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso16g1670 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 33 772 - -
Gso16g1670 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 33 772 - -
Gso16g1670 774 ProSiteProfiles CBS domain profile. 706 768 IPR000644 -
Gso16g1670 774 PRINTS Plant CLC chloride channel signature 84 92 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g1670 774 PRINTS Plant CLC chloride channel signature 287 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g1670 774 PRINTS Plant CLC chloride channel signature 430 446 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso16g1670 774 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 759 - -
Gso16g1670 774 SMART cbs_1 710 761 IPR000644 -
Gso16g1670 774 SMART cbs_1 599 652 IPR000644 -
Gso16g1670 774 SUPERFAMILY Clc chloride channel 91 582 IPR014743 -
Gso16g1670 774 Pfam CBS domain 710 756 IPR000644 -
Gso16g1670 774 SUPERFAMILY CBS-domain pair 583 757 IPR046342 -
Gso16g1670 774 Pfam Voltage gated chloride channel 188 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1670 Gso-Chr16 37317017 37329039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1670 24 772 Ion Channels AT5G49890 67.742 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1670 K05016 - gmx:100809070 1439.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1670 16 37317017 37329039 Gso9g1303 9 36619623 36629659 GST