Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1659 ATGCCTGCCATGAAAAAGAATCCTGAGCTAACTTGTATTGGTTCTGTATTCAACATGTTGGGGAAGGAGCTTGGAGAACCTGTAGACTTTGAACTTCCAGATTCATTTAATAAATCCAAGCCAATGCAGTACACCTATATAAAACGCAATATATATCTCACTAAGAAGGTCAAGAGATCCCGGTTTGATGATGATGGCATATTCTGTTCCTGTACTCCTTCCCCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGAATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCCTGTCTCAACAAACCATTTCAGAACCGTCCTGTGAAAAAAATGAAATTGGTCAAGACCGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTCATTGAATATGTTGGAGAAGTCATTGATGACAAAACATGCGAGGAAAGGCTTTGGAACATGAAACATAGTGGGGAAACAAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATACAAGGGAAACAAATCAAGATACATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTTACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGAGTGTAGGCGTAAGTTGGGTGTCCGACCTACCAAGTCTAAACTTTCTTCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTATCAGAATGGAGGTTTGCAAATTGGAAGTTCTCGTGTTGTTGACCAACCAAAGTGCTTGCACAATTGCATTGGTGAAGTTATTAGGATAAAACATCTTGAAAATGAGAGGTTTGGAATTATTAAACGATTTGATAAGTATTCCCGAAAACATTCGATCATGTTTGAGGATGGTTGTGTTGAAATTTATGACATGTCAAAAGAGGACTTTGAACTTGTGAGATAG 1050 0.3943 MPAMKKNPELTCIGSVFNMLGKELGEPVDFELPDSFNKSKPMQYTYIKRNIYLTKKVKRSRFDDDGIFCSCTPSPGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAECRRKLGVRPTKSKLSSDAALKLVAYQVYQNGGLQIGSSRVVDQPKCLHNCIGEVIRIKHLENERFGIIKRFDKYSRKHSIMFEDGCVEIYDMSKEDFELVR* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1659 349 SMART set_7 115 238 IPR001214 GO:0005515
Gso16g1659 349 ProSiteProfiles Post-SET domain profile. 238 254 IPR003616 -
Gso16g1659 349 Gene3D SET domain 31 270 IPR046341 -
Gso16g1659 349 Pfam SET domain 126 231 IPR001214 GO:0005515
Gso16g1659 349 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 292 IPR025787 -
Gso16g1659 349 SUPERFAMILY SET domain 25 244 IPR046341 -
Gso16g1659 349 SMART PostSET_3 238 254 IPR003616 -
Gso16g1659 349 PANTHER SET DOMAIN PROTEINS 14 347 - -
Gso16g1659 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 14 347 - -
Gso16g1659 349 SMART shorttest3 64 114 IPR006560 GO:0005634|GO:0018024
Gso16g1659 349 CDD SET_ASHR3-like 116 254 - -
Gso16g1659 349 ProSiteProfiles SET domain profile. 115 232 IPR001214 GO:0005515
Gso16g1659 349 ProSiteProfiles AWS domain profile. 64 113 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1659 Gso-Chr16 37230372 37241508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1659 88 250 C2H2 Transcription Factor Family AT2G23740 34.973 1.99e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso16g1659 SET 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1659 - - gmx:100794521 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1659 16 37230372 37241508 Gso9g1291 9 36485535 36496226 GST