Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1643 ATGGCTTGTTCAGTGCATCTACTTCTTCTTCTTCTCACTTCACTTCTGGCTTTGTTCTTTAACCCAACATGTGTCTATGGCAATGATGAGCTTAGAGCACTTTTGGACTTGAAATCAAGTTTGGATCCAGAAGGGCACTTTCTATCCTCATGGACCATGGGTGGTAACCCATGTGATGGTTCCTTTGAGGGAGTGGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTGTCTTTGCAGGGAAAAGGCCTCTCTGGGAAGCTCTCACCAGCTATTGCTGGACTCAAACACTTGACAGGACTCTACTTGCACTACAACTCTTTGTATGGAGAGATTCCAAGGGAAGTTGCTAACTTGACTGAGCTTAGTGACTTGTACTTGAATGTGAATCACTTGTCTGGTGAAATCCCACCTGAGATTGGCAAGATGGAGAATCTGCAAGTTTTGCAGCTTTGCTATAATCAGTTAACCGGAAGCATACCTACACAGCTTGGTGATTTGAAGAAGCTTAGTGTTCTTGCTCTTCAGTCAAACCTGCTGGGTGGAGCTATCCCTGCTAGTCTAGGTGATTTGGGAATGTTGATGAGGCTAGATTTGAGCTCCAATAATCTCTTTGGTTCCATTCCCATTAAACTAGCTGATCTTCCTTCACTGCAAGTTCTGGATGTTCACAATAATACTCTCTCTGGGAATGTACCTCCTGCTCTAAAGAGACTAGAGGAAGGATTTGTGTTTGAACATAATATGGGGTTATGTGGTGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAGATCATGTCAATCTCACTCGACCAGAACCTTATGGAGCTGGAGTTGGTGGTCTTTCTAGAGATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCAAAATCCAAACAAGCGACATCTATCACAGTTGGCATTGTTCTACTAACAATTGCAGTATCAGCAATTGGTATTTTGACCTTCACTATGTATCGTCGGCGGAAACAAAAGCTTGGAAGCACATTTGATATCTCTGAAGGCTGTCTAAGTACAGATCAAGCCAAGAGTATATACAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACTCTAATGGATGGGACCCTTTGGCTGACAGCAAGAATTTCAGTGGGGATAGGCAAGACATGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAATGGAGTCAGCTACTCAGTATTTCTCCGAGTTGAATTTGTTGGGGAAGAGCAACTTTAGTGCAACGTATAAAGGAGTTCTAAGAGATGGATCTGTTGTTGCTGTCAAGAGTATCAGTAAAACTAGTTGCAAATCGGATGAAGCTGAATTTTTGAAGGGATTGAACATCTTGACCTCACTGAGGAATGAGAATTTAGTGAGGCTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAATGCTTCCTGGTTTATGATTTTGTTTCTAATGGAAATCTGTCACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTCCTTGAATGGTCAACAAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATAGCATATTTACATGCATACAAAGCAAACAAACCAGCTCTTGTTCACCAAAGCATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGTACAACCCATTGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGATGTTGTCTTCTCCGCGCTGAAGGGTAGCGCAGCAAAGGGCTACCTAGCTCCAGAATACACCACTACCGGCCGGTTCACAGAGAAAAGTGATGTTTATGCATTTGGAGTCCTTCTTTTCCAGATCCTCACGGGGAAGCAGAAGATCACAAGTGCAATGCGCCTTGCTGCAGAGTCCTTCAAGTTCCCAGAATTTATTGATCCTAACTTACGTGGCAAGTTCTTTGAATACGAGGCGGCTAAACTAGCAAGAATGGCCTTACTTTGCTCCCATGAGTCTCCATTTGAAAGGCCGAGCATGGAAGCCATTGTTCAAGAACTGGGAAATTGTAGTAGCTGTCTTTAA 2055 0.4341 MACSVHLLLLLLTSLLALFFNPTCVYGNDELRALLDLKSSLDPEGHFLSSWTMGGNPCDGSFEGVACNEKGQVANVSLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGEIPREVANLTELSDLYLNVNHLSGEIPPEIGKMENLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNLLGGAIPASLGDLGMLMRLDLSSNNLFGSIPIKLADLPSLQVLDVHNNTLSGNVPPALKRLEEGFVFEHNMGLCGVGFSSLKACTASDHVNLTRPEPYGAGVGGLSRDIPETANVKLPCNTTHCQNPSKSKQATSITVGIVLLTIAVSAIGILTFTMYRRRKQKLGSTFDISEGCLSTDQAKSIYRKNGSPLVSLEYSNGWDPLADSKNFSGDRQDMFQSFRFNLEEMESATQYFSELNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNILTSLRNENLVRLRGFCCSRGRGECFLVYDFVSNGNLSRYLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAYKANKPALVHQSISAEKVLIDQRYNPLLSDSGLYKLLTNDVVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILTGKQKITSAMRLAAESFKFPEFIDPNLRGKFFEYEAAKLARMALLCSHESPFERPSMEAIVQELGNCSSCL* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1643 684 SUPERFAMILY Protein kinase-like (PK-like) 390 677 IPR011009 -
Gso16g1643 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 682 - -
Gso16g1643 684 Gene3D Ribonuclease Inhibitor 144 262 IPR032675 -
Gso16g1643 684 ProSiteProfiles Protein kinase domain profile. 412 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1643 684 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
Gso16g1643 684 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Gso16g1643 684 SUPERFAMILY L domain-like 25 237 - -
Gso16g1643 684 Gene3D Ribonuclease Inhibitor 29 142 IPR032675 -
Gso16g1643 684 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 682 - -
Gso16g1643 684 Gene3D Phosphorylase Kinase; domain 1 382 490 - -
Gso16g1643 684 Gene3D Transferase(Phosphotransferase) domain 1 491 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1643 Gso-Chr16 37126291 37130123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1643 8 525 Miscellaneous Gene Families AT4G22730 56.792 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gso16g1643 PK_Tyr_Ser-Thr 5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1643 - - gmx:100789253 1333.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1643 16 37126291 37130123 Gso9g1272 9 36277155 36281097 GST
Gso16g1643 16 37126291 37130123 Gso10g1612 10 42645369 42648676 PCT
Gso10g1612 10 42645369 42648676 Gso16g1643 16 37126291 37130123 PCT