Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1637 ATGGCTTCGGGATCACGTTCCTCTTCCTCTTCCTCCAATTACCACGTGTTCCTCAGCTTCAGAGGGGAAGACACACGTCTTGCTTTTACTGGCCATCTCTACAAAGCTCTTCATGACAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAAAGAGGGGAGGAAATAACACCAGCACTTATGAAGGCAATTCAAGATTCCAGAGTTGCCATCACTGTGCTCTCTGAACACTATGCTTCTTCTTCGTTTTGTTTAGATGAACTTGCAACCATCCTTCACTGTCACCAGAGGAAACGGTTGTTGGTTATACCGGTCTTTTATAAGGTGGATCCTTCTGATGTGAGACACCAGAAAGGTAGTTATGGAGAAGCATTGGCAAAGCTTGAGAGGAGGTTCCAGCATGACCTGGAGAAGTTGCAAAGATGGAAAATGGCTCTGCAGCAAGTAGCTGACTTATCTGGCTATCATTTCAAAGAGGGAGATGGATATGAATTCAAGTTTATTGAGAAGATTGTTGAGCAGGTATCCAGGGTGATTAATCCTCGTACTTTACATGTTGCGGATTACCCAGTTGGACTAGAGTCACGAGTGCTAGATGTAAGGAGACTTTTGGATGCTGGATCTGATTATGATGTCCACATGATAGGGATTCATGGAATGGGCGGGATAGGAAAATCAACACTTGCTCGAGCTGTCTATAATGAATTGATAATTGCTGAGAAGTTTGATGGTTTGTGTTTTCTTGCAAATGTGAGGGAAAACTCAAACAAAAACGGGTTAGAACACCTCCAAAGAATCCTTCTTTCAGAAATACTCGGAGAGATGAACATCAACTTAACAAGTAAGCAACAAGGAATTTCAATCATACAGTCTAGGCTCACGGGAAAGAAGGTTCTCTTGATTCTAGACGATGTTAACACACGCGAGCAATTACAAGCAATTGCTGGAAGACCTGATTGGTTTGGTCCCGGCAGCAAAATCATCATCACAACTCGGGACAAACAATTGCTAAGATCTCATGAAGTTAATAAAACATATGAGATGAAGCAATTGGATGAGAACGATGCTCATCAGTTGCTTACATGGCAAGCTTTTAAAAAGGAAAAAGCTTGTCCAACTTATGTGAAGGTCTTGAAACGTGCAGTAACTTATGCTTCTGGTCTTCCATTGGCGTTGGAAGTAATAGGTTCCCACTTGAAGGGAAAAAGTATACAAGAATGGGAATCTGCCATCAAACAATATAGAAGAATTCCCAAGAAGGAAATTTTAGATATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAAAAGAATGTTTTTCTTGACATTGCTTGTTGCTTCAATGGATGGGGATTGACAGAGGTTGAACATATACTTCGTGGTCGTTATGATGACTGCATGAAACATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAGTTTAGTGGGTGGTGGTGGGGTGTTAACATGCATGACTTGATTCAGGACATGGGCAGGCGAATTGACCAACAAGAATCCTCAAAAGAGCCAGGGAAGCGAAGGAGATTGTGGTTAACAAAAGATATAATTCAAGTTTTAGAAGACGACTCGGGAACCAGTGAAATTGAAATCATATGTCTGGATTGCTCCTTATCCGAGAAAGAAGCAACAATAGAATGGAATGGAAATGCCTTGGAAAAGATGAAAAACCTTAAAATACTTATTATTAGAAGTGGTAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAAGTTTAAGAGTACTGGAATGGCACCGGTATCCTTCTAATTGTTTACCATCTAATTTTCATCCGAAGGAACTTGCCATATGCAAGTTACCTCAAAGTTGCATTACGTCATTTGGGTTCCATGGCTCAGGGAAGAAGTTAAGGAATCTAAAGGTTTTGAATTTTAAAGAGTGTGAATCTTTAACAGAGATACCTGACGTATCTGATCTCCCTAATTTGGAAGAACTTTCATTTGATGGGTGTGTGAATTTAATTACAGTTCACCACTCAATTGGTTTTCTAAATAAACTTCAACTATTGAATGCTACACGGTGCAGGAAGCTTACCACATTTCCACCTCTCAACTTGGCCTCTCTTGAAAGACTTGGACTTTCATTTTGTTCGAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGAAAAACTTATCGATGCTTGAATTGTTTGACCTTGGCTTAAAAGAATTGCCAGTTTCATTTCAAAATCTTGTTGGACTCGAAACTTTATCCCTGCGTGATTGTGGAATTCTTTTGTTACCAAGTAACATTGTCATGATGCCTAAACTGTCTTCATTGAAAGCTACAAGTTGCAAGGGGTTGCAATGGGTAAAATCAGAAGAGGGTGAAGAAAAAATGGGCTCAATAGTATGTTCCAATGTATATCACTTCAGTGTCGATGGTTGCAACCTGTATGATGATTTTTTTTCAACAGGTTTCATGCAGTTTGATCATGTGAAAACTTTAAACCTAAGGGACAATAATTTCACATTCCTTCCTGAATGCATCAGAGAATTACAATTTTTAACAAGACTTGATGTGAGTGGTTGCTATCATCTTCAGGAAATTAGAGGGGTTCCACCAAACTTAAAAGATTTCAAGGCAAGAGAATGTATTTCCTTGTCTTCCTCGAGTTCAAGCATGTTATCAAATCAGGAATTGCATGAGGCTGGACAAACTAAGTTTTGGTTTCCAGGAGCAACTATTCCAGAGTGGTTCAATCACCAAAGTAGGGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAATTCCCTGACAATGTTCTTTGTCTTCTTCTAGCAAGTGTGGATGGCGTGAATGAATATAATATGCCCATGCCCTCGGTGTTCGTCAATGGTGAACTTCATGAAATTCCCTCTTGGGGAACTCGAGTAAGAAAGGTGAAATTGGATTATACATATCTATTTGACCTAAATTCAACTTTATATGATCTTTATTATCAATATGAAGTGGATTTAGAAAAGGAATGGAACCATGTGGAAATTACATACGCAGGTCTGTTAGAGACCTCACTGGTTAAAGCAATCGGAATCCATGTATTTAGACAGGATGATATTCGATATGATGATCCCTATGGCAAGAGAAAATTCGAGCATGATCTCAACAGTTTTGAATCACAACCACTCATTAAAAGGCCTAGGTTGTTTTGCAGGTTATCGAGGTGGGTTGGCCCTGAAAGAATTATAAATGTTCTGGGGAATGCTGCAGATGGAGCTTTAATTACTAATGCCGAGAGGAGATATAGGCATATTTCTATGGACTCCTGTTGTCCGCAATGCCTCTTTTTGGAGGAGACATGTCTGCATGTTCTTCGTGATTGTCCAAAGGTGGCTGCATTTTGGATAAGTGTGTTACCAAAGAAATTAGCACCAAAGTTTTTTAATGGTGATGTGACAGTGTGGCTGGAAACAAATTTATCTTTTTCAGAGGCAGCTTTTTTTTGGCCAACTTTTTTTGGGATTGCAGTGGAACTGGTGTGGGAATCCCGCAACGACCTTGTGTTCTCTCAACATAGCACTTCGAGATATTTAGATCGTAGTATTGTCTTTAAGCGCTATAAAGATTATATGAGAGCCCATGCTTCTCACACTTTGATGACGAGGAATCTCTTTAAGTGGAGGAGGCCTTTGTTACAATATTTTTATTGGTTGTTGAGGCTAAATGTGAGTGGTGCCTATAATCCCTCTTCAGGTACCGCTGCATGCGGAGGTATATTCAGTGACAACTGTGGTAGATTCGTGCTTGGGTTTTCGGTGAAGCTTGGGGAATGTTGGTCAAATGATGAGGGTGAAATATGGGGTATTTATCATGGTATGAAGATTGCAAGGAAGTATGATATTTGGGGTTTATATCGTCATATTCTAAGGCAGCGTAGCATTCGAATAAGTCCTAAGATTGCAAGGCAGCATGATTTTGGTAAAATTTTTGTGGAATCGGGCTCTGAGAAAGCTATTGGGTTTGTGTTAGATGGATGCCCTACATCTCCATCTCCATCTACATCTACATCTCCATCTACATGTACATCGCTGGAGCATTCTTTCCCACTCTGA 4101 0.3977 MASGSRSSSSSSNYHVFLSFRGEDTRLAFTGHLYKALHDKGIHTFIDDEKLQRGEEITPALMKAIQDSRVAITVLSEHYASSSFCLDELATILHCHQRKRLLVIPVFYKVDPSDVRHQKGSYGEALAKLERRFQHDLEKLQRWKMALQQVADLSGYHFKEGDGYEFKFIEKIVEQVSRVINPRTLHVADYPVGLESRVLDVRRLLDAGSDYDVHMIGIHGMGGIGKSTLARAVYNELIIAEKFDGLCFLANVRENSNKNGLEHLQRILLSEILGEMNINLTSKQQGISIIQSRLTGKKVLLILDDVNTREQLQAIAGRPDWFGPGSKIIITTRDKQLLRSHEVNKTYEMKQLDENDAHQLLTWQAFKKEKACPTYVKVLKRAVTYASGLPLALEVIGSHLKGKSIQEWESAIKQYRRIPKKEILDILKVSFDALEEEEKNVFLDIACCFNGWGLTEVEHILRGRYDDCMKHHIGVLVEKSLIKFSGWWWGVNMHDLIQDMGRRIDQQESSKEPGKRRRLWLTKDIIQVLEDDSGTSEIEIICLDCSLSEKEATIEWNGNALEKMKNLKILIIRSGKFSKGPNYFPESLRVLEWHRYPSNCLPSNFHPKELAICKLPQSCITSFGFHGSGKKLRNLKVLNFKECESLTEIPDVSDLPNLEELSFDGCVNLITVHHSIGFLNKLQLLNATRCRKLTTFPPLNLASLERLGLSFCSSLENFPEILGEMKNLSMLELFDLGLKELPVSFQNLVGLETLSLRDCGILLLPSNIVMMPKLSSLKATSCKGLQWVKSEEGEEKMGSIVCSNVYHFSVDGCNLYDDFFSTGFMQFDHVKTLNLRDNNFTFLPECIRELQFLTRLDVSGCYHLQEIRGVPPNLKDFKARECISLSSSSSSMLSNQELHEAGQTKFWFPGATIPEWFNHQSRGPSSSFWFRNKFPDNVLCLLLASVDGVNEYNMPMPSVFVNGELHEIPSWGTRVRKVKLDYTYLFDLNSTLYDLYYQYEVDLEKEWNHVEITYAGLLETSLVKAIGIHVFRQDDIRYDDPYGKRKFEHDLNSFESQPLIKRPRLFCRLSRWVGPERIINVLGNAADGALITNAERRYRHISMDSCCPQCLFLEETCLHVLRDCPKVAAFWISVLPKKLAPKFFNGDVTVWLETNLSFSEAAFFWPTFFGIAVELVWESRNDLVFSQHSTSRYLDRSIVFKRYKDYMRAHASHTLMTRNLFKWRRPLLQYFYWLLRLNVSGAYNPSSGTAACGGIFSDNCGRFVLGFSVKLGECWSNDEGEIWGIYHGMKIARKYDIWGLYRHILRQRSIRISPKIARQHDFGKIFVESGSEKAIGFVLDGCPTSPSPSTSTSPSTCTSLEHSFPL* 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1637 1366 SUPERFAMILY "Winged helix" DNA-binding domain 421 530 IPR036390 -
Gso16g1637 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 445 IPR027417 -
Gso16g1637 1366 Pfam TIR domain 13 178 IPR000157 GO:0007165
Gso16g1637 1366 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 920 IPR044974 GO:0006952
Gso16g1637 1366 Pfam NB-ARC domain 201 417 IPR002182 GO:0043531
Gso16g1637 1366 Pfam Reverse transcriptase-like 1238 1298 IPR002156 GO:0003676|GO:0004523
Gso16g1637 1366 Gene3D - 181 347 IPR027417 -
Gso16g1637 1366 SUPERFAMILY L domain-like 556 898 - -
Gso16g1637 1366 Gene3D Ribonuclease Inhibitor 718 901 IPR032675 -
Gso16g1637 1366 SMART till_3 13 153 IPR000157 GO:0007165
Gso16g1637 1366 Gene3D - 351 435 IPR042197 -
Gso16g1637 1366 MobiDBLite consensus disorder prediction 1345 1366 - -
Gso16g1637 1366 Gene3D - 10 180 IPR035897 -
Gso16g1637 1366 PRINTS Disease resistance protein signature 215 230 - -
Gso16g1637 1366 PRINTS Disease resistance protein signature 293 307 - -
Gso16g1637 1366 PRINTS Disease resistance protein signature 386 400 - -
Gso16g1637 1366 PRINTS Disease resistance protein signature 630 646 - -
Gso16g1637 1366 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Gso16g1637 1366 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Gso16g1637 1366 Gene3D Ribonuclease Inhibitor 517 717 IPR032675 -
Gso16g1637 1366 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 920 - -
Gso16g1637 1366 CDD RNase_H_like 1237 1293 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1637 Gso-Chr16 37050829 37057246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1637 9 786 WRKY Transcription Factor Family AT4G12020 32.000 7.67e-82 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1637 - - gmx:100807994 2161.73