Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1627 ATGGAAGTTGCGTTGTTGTTGGCTTTTGTAGGCAAGTTGAGAAGGCACTTTTTGTTGCTTGTTGTGGGTATGGTGCTTGTGCTGTTCCTCTCTCCGTTTGTTTCACCTCTTGGTGATGAAGGACAAGCATTGATGAAGATTAAGTCTTCATTCAGCAATGTGGCAGATGTTCTGCATGATTGGGATGCTTTGCATAATGACGACTTCTGTTCCTGGCGCGGAGTCTTGTGTGACAATGTCAGCCTTTCTGTGCTTTTTCTGAATTTGTCAAGCTTGAATCTTGGTGGGGAGATATCACCAGCCATTGGTGACTTAGTAAACTTGCAATCCATAGACCTGCAGGGAAATAAACTAACTGGTCAAATTCCAGATGAAATTGGAAACTGTGCTGAGCTTATTTATCTGGATTTGTCTGATAATCAACTATATGGTGATATACCTTTCTCCATATCAAAGCTAAAGCAACTTGTGTTTCTGAATTTAAAGAGTAATCAGTTGACTGGTCCTATCCCCTCAACATTAACCCAAATTTCAAACTTGAAGACTCTTGATCTTGCACGAAATAGACTCACTGGTGAGATTCCTAGACTGCTCTATTGGAATGAAGTCTTGCAGTACCTGGGGTTGCGAGGTAACATGTTGAGCGGAACTCTGTCCTCTGATATCTGTCAATTGACTGGTTTGTGGTATTTTGACGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGTACAAATTTTGCAATCTTGGATCTTTCATACAATCAGATTTCTGGGGAGATTCCCTATAATATTGGATTTCTTCAAGTAGCTACTTTGTCGCTTCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTCATTGGTTTAATGCAAGCACTTGCCATTTTGGATTTGAGTGACAATGAGCTAATAGGACCCATTCCTCCCATACTAGGCAATTTGTCTTATACTGGAAAGCTGTACCTTCATGGAAACATGCTTACTGGACCAATACCTCCCGAACTTGGCAATATGTCAAGACTAAGCTACCTGCAATTGAATGACAATCAATTAGTAGGCCAAATTCCTGATGAACTTGGGAAGCTTGAACATTTGTTTGAATTGAATCTAGCCAATAATCATCTTGAAGGATCTATTCCACTTAACATTAGCTCATGCACTGCCTTGAATAAGTTTAATGTGCATGGAAATCATTTAAGTGGTTCAATTCCTTTGAGCTTTAGCAGGCTTGAGAGCTTGACTTATTTAAATCTTTCTGCAAACAACTTTAAAGGGAGTATACCTGTTGAGTTGGGCCATATAATAAATCTTGACACGCTGGATCTATCTAGCAATAATTTTTCAGGGCATGTTCCGGGGTCAGTTGGTTATCTTGAGCATCTTCTGACCTTGAACTTGAGCCATAATAGTCTTCAGGGCCCCTTGCCTGCTGAATTTGGAAATCTTAGAAGCATACAGATTATTGATATGTCATTCAACTATCTGTTGGGCAGCATTCCTCCGGAAATTGGTCAGCTGCAGAATCTTGTGTCTCTGATTTTGAACAACAATGATTTGCGTGGGAAGATTCCAGATCAGCTTACCAATTGCTTAAGTCTTAACTTCCTAAATGTCTCATACAATAGCTTATCTGGGGTCATTCCTCTCATGAAGAACTTCTCACGGTTTTCTGCTGACAGCTTCATTGGAAATCCATTATTATGTGGAAATTGGTTAGGATCCATATGTGATCGTTACATGCCAAAATCCAGAGTGGTTTTTTCAAGGGCTGCAATTGTTTGTCTCATTGTTGGTACCATCACATTATTGGCCATGGTAACTATAGCAATCTACAGATCAAGCCAATCAACGCAATTGATTAAAGGATCTAGTGGAACTGGGCAAGGGCCACCCAAGCTTGTAATTCTTCATATGGGCTTGGCCATCCATACCTTTGATGACATTATGAGAGTTACTGACAATCTCAATGAGAAGTATATTGTAGGGTATGGTGCCTCTAGTACTGTGTACAAGTGTGTTTTAAAGAATTCCCGGCCAATTGCAATTAAACGACTATACAACCAGCATCCACACAGCTCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAGTATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGGTCCCTCGAAAAAGGTAAAACTTGATTGGGAGGCACGCATGAGGATTGCCGTGGGAACTGCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATCATTCACAGGGATATAAAGTCCTCAAACATCCTGCTGGATGAAAACTTTGAAGCTCGTCTCTCTGATTTTGGCATTGCCAAATGTTTGTCAACTGCAAGAACTCATGCGTCAACGTTTGTTCTTGGCACAATAGGCTATATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCCGATGTGTATAGCTTTGGCATTGTTCTTCTTGAGCTACTAACTGGGAAGAAAGCAGTGGACAACGATTCCAATTTGCATCACTTGATATTATCCAAGGCAGATAACAACACTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACGAAAAAAAATCCTTCCGAGAGGCCAACCATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCCCAGTAAAAATATCTTCGTCCCTTCTTCAAAGACCATTGATTATGCACAGTTTGTGATTCAAAAGGGAAAACAAAACAACCTCCACCCCCTACAAATGGATAGGCTACAACCTCAGCAGTTCTCTAATGATCAATGGTTTGTTCGCTTTGAGGATGTTGTATCAAATAACAGCCTCTAG 2982 0.4105 MEVALLLAFVGKLRRHFLLLVVGMVLVLFLSPFVSPLGDEGQALMKIKSSFSNVADVLHDWDALHNDDFCSWRGVLCDNVSLSVLFLNLSSLNLGGEISPAIGDLVNLQSIDLQGNKLTGQIPDEIGNCAELIYLDLSDNQLYGDIPFSISKLKQLVFLNLKSNQLTGPIPSTLTQISNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSSDICQLTGLWYFDVRGNNLTGTIPDSIGNCTNFAILDLSYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSDNELIGPIPPILGNLSYTGKLYLHGNMLTGPIPPELGNMSRLSYLQLNDNQLVGQIPDELGKLEHLFELNLANNHLEGSIPLNISSCTALNKFNVHGNHLSGSIPLSFSRLESLTYLNLSANNFKGSIPVELGHIINLDTLDLSSNNFSGHVPGSVGYLEHLLTLNLSHNSLQGPLPAEFGNLRSIQIIDMSFNYLLGSIPPEIGQLQNLVSLILNNNDLRGKIPDQLTNCLSLNFLNVSYNSLSGVIPLMKNFSRFSADSFIGNPLLCGNWLGSICDRYMPKSRVVFSRAAIVCLIVGTITLLAMVTIAIYRSSQSTQLIKGSSGTGQGPPKLVILHMGLAIHTFDDIMRVTDNLNEKYIVGYGASSTVYKCVLKNSRPIAIKRLYNQHPHSSREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPSKKVKLDWEARMRIAVGTAEGLAYLHHDCNPRIIHRDIKSSNILLDENFEARLSDFGIAKCLSTARTHASTFVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKKNPSERPTMHEVARVLASLLPAPPSKNIFVPSSKTIDYAQFVIQKGKQNNLHPLQMDRLQPQQFSNDQWFVRFEDVVSNNSL* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1627 993 SUPERFAMILY L domain-like 39 321 - -
Gso16g1627 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Gso16g1627 993 Gene3D Ribonuclease Inhibitor 38 202 IPR032675 -
Gso16g1627 993 ProSiteProfiles Protein kinase domain profile. 661 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1627 993 SMART LRR_typ_2 416 440 IPR003591 -
Gso16g1627 993 SMART LRR_typ_2 344 367 IPR003591 -
Gso16g1627 993 SMART LRR_typ_2 464 487 IPR003591 -
Gso16g1627 993 SMART LRR_typ_2 105 129 IPR003591 -
Gso16g1627 993 SMART LRR_typ_2 512 536 IPR003591 -
Gso16g1627 993 SMART LRR_typ_2 225 249 IPR003591 -
Gso16g1627 993 SMART LRR_typ_2 368 392 IPR003591 -
Gso16g1627 993 SMART LRR_typ_2 177 201 IPR003591 -
Gso16g1627 993 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524
Gso16g1627 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 28 959 - -
Gso16g1627 993 Gene3D Ribonuclease Inhibitor 203 275 IPR032675 -
Gso16g1627 993 Pfam Leucine rich repeat 107 166 IPR001611 GO:0005515
Gso16g1627 993 Pfam Leucine rich repeat 442 501 IPR001611 GO:0005515
Gso16g1627 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 28 959 - -
Gso16g1627 993 SMART serkin_6 661 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1627 993 Gene3D Phosphorylase Kinase; domain 1 636 736 - -
Gso16g1627 993 Gene3D Transferase(Phosphotransferase) domain 1 737 938 - -
Gso16g1627 993 SUPERFAMILY Protein kinase-like (PK-like) 639 927 IPR011009 -
Gso16g1627 993 Pfam Protein kinase domain 664 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1627 993 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Gso16g1627 993 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Gso16g1627 993 Pfam Leucine Rich repeat 249 265 IPR001611 GO:0005515
Gso16g1627 993 Pfam Leucine Rich repeat 178 193 IPR001611 GO:0005515
Gso16g1627 993 Gene3D Ribonuclease Inhibitor 276 585 IPR032675 -
Gso16g1627 993 SUPERFAMILY RNI-like 242 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1627 Gso-Chr16 36930405 36938368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1627 106 993 Receptor kinase-like Gene Family AT5G07180 75.450 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gso16g1627 Pkinase 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1627 K20718 - gmx:100305433 1935.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1627 16 36930405 36938368 Gso9g1255 9 35988956 35997440 GST