Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1619 ATGGAGTTGTTTACAAACCATAAACCAATAGCATCCATGGCTTCCTACAAGATTCTCTTCCTCTTCATCCTTCTTAGCTTCCTCAATTTTGCAACTACTGAGGCACAAGATCAAAGCTCCACCCCTGTCTATATATACCATAACTGCTCCGGTGGCAACACCACCGCTAACAGTGCCTTCCAAATAAACGTCAGGACCCTCCTCTCTTCCTTATCTTCAAACGCCCCCGGCGACAACGGATTCTACAACACCACAGTCCCTCCAGAAAACCCCTCAGACTCTGTCTTTGGACTCTTCATGTGCAGGGGTGACGTTCCTCCTCAGCTTTGTCAACAATGCGTCCAAAATGCAACCCAGAGACTACGCTCAATGTGCTCACTGTCCATTCAAGCTGTGATTTGGTACGATGAGTGCACGGTTCGTTATTCCAACCGCTCCTTTTTCTCCACCGTGGACACTAGGCCTAGAGTTGGCCTGTTGAACACTGCCAATATCTCTAACCAGGAAAGTTTCATGCGTTTAATGTTTTCTACAATAAACAAAACTGCAGATGAAGCTGCTACCAATGACAAGAAGTTTGCCACAAGGCAAACAAACATATCTGAATTTCAGAACCTTTATTGTCTAGCTCAGTGCACTCCAGATTTGTCACCCCTTGATTGCAGAAGCTGTCTCAGTAAAGTGATAGGAGACCTTTCATGGTGCTGTGAAGGAAAGCAGGGAGGGAGAGTTCTATATCCCAGTTGTAATGTTAGGTATGAATTGTACCCTTTCTACCGCTCCACAAATAGAACTAAACCACCAGCGTGGGTTCCTGCAACAAATTATCCCGATGCAGATTCACAATTTTCAGAAGATCCAACTTATCTAAACCACAGTTGCCCAACCAATGTAACTGCTGACAGCACTTTCCAAATGTATCTCAAGACCCTTCTCTTTTACTTGTCTTCCAATGCCACAAATGGGAACAAATACTACGAGGACAACATAGAGCAAACTGTGTATGGCCTCTTCATGTGCCGAGGCGATCTTCCCTCTCAACTCTGCCAACAATGCGTCATCAACGCAACCCACCGAATATCCTCAGTTTGCAATTCACTTCAAGAGGGAATCATTTGGTACAGCCACTGCATGCTTCGATATTCCAATCGGAATTTCTTCTCTGAATTGGAAGAAAGTCCAAAAACTGACATGCTGAGCGTTACCACTTCCTCCACCAGCCCCATCCCTGGGCAAGACTTCTTCACTTATACATTATCAGATACCATATTTAAGCTGGCGGAAGAGGCAGGGGATACCACTGAGAGATATGCCACAAAATCATTAAAATTGACTGATTTTCAAACTCTGTATACTCTTGCTCAATGCACGCAGGATTTGTCTAGTGATGATTGTCGGATATGTCTGGTAGATATAAATAGAAAAATTCCATGGTTCCGCTTGGGAAGCGAAGGGGGAAGAGTTCTATATCCGAGCTGCAATCTCAGGTTTGAATTGTTCCAATTTTACAGGGGTAGTGGTGAAGAAACTCAATCGCCAATGCCGGGTAGTGGTGAAGAAACTCAATCGCCAATGCCGGTTAATCCTTCTACACCAGGCCTTCAAGGTAAAAGAAAAGTCCGATTGCGAACAATAATTTTGATTATTGTACCCACAATTGTTTCTGCGACGCTCTTCTTTCTTGGCTATTATTTGGTAAAGAGAAAAGCAAGAAAGAGTGTTAAGACTATTCTTAGAGAAAATTTTGGTCATGAAAGTGTCACTTTAGAGCCATTGCAATTTAGTTTGGCTGTAATTGAAGCAGCAACCAACAACTTTTCAAATGATAATAGAATCGGCAAAGGCGGGTTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGACAAATAGCTGTAAAAAGACTCTCCAAAAGTTCTAAGCAAGGCGCAAATGAGTTTAAGAATGAAGTTTTATTAATAGCCAAACTTCAACACAAAAATCTTGTAACATTCATCGGATTTTGTCTTGAAGAACTTGAAAAAATACTTATCTACGAATATGTGCCAAACAAGAGTCTTGATTATTTTTTATTTGATCCTCAACGAGCAAAGATGTTAAGTTGGTTTGAACGCTACAACATTATAGGAGGAATTGCCCGAGGAATTTATTACTTACATGAATTATCTCGACTCAAAATCATACACCGTGATCTCAAACCTAGTAATGTTTTATTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTTTGGCTAGAATTGTTGAAATAAATCAAGACCAAGGAAGTACAAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGCTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTGATGGTTCTAGAGATTATTTCAGGAAAAAAGAATTTAGGCTTATATGAACCACATCGTGTTGCTGATGGCCTCTTGAGTTGTGTTTGGAGACAATGGAGGGATCAAACACCCTTAAGCATACTAGACGCAAGTATTAATGAAAATTATTCTGAAATTGAAGTTATTAAATGCATTCAAATTGGTTTATTATGTGTTCAACAAAATCCTGATGACAGACCCACAATGGTTGCAATTGTTTCATATCTTAGTAGTCACTTAATTGAATTGCCAAGTCCTCAAGAACCAGCCCTTTTCTTACATGGTAGAAAGGATCCTAAAGCATTGTCTATTAATGAAATGTCTGTAAGTCAATTTCTTCCTCGATAG 2754 0.4016 MELFTNHKPIASMASYKILFLFILLSFLNFATTEAQDQSSTPVYIYHNCSGGNTTANSAFQINVRTLLSSLSSNAPGDNGFYNTTVPPENPSDSVFGLFMCRGDVPPQLCQQCVQNATQRLRSMCSLSIQAVIWYDECTVRYSNRSFFSTVDTRPRVGLLNTANISNQESFMRLMFSTINKTADEAATNDKKFATRQTNISEFQNLYCLAQCTPDLSPLDCRSCLSKVIGDLSWCCEGKQGGRVLYPSCNVRYELYPFYRSTNRTKPPAWVPATNYPDADSQFSEDPTYLNHSCPTNVTADSTFQMYLKTLLFYLSSNATNGNKYYEDNIEQTVYGLFMCRGDLPSQLCQQCVINATHRISSVCNSLQEGIIWYSHCMLRYSNRNFFSELEESPKTDMLSVTTSSTSPIPGQDFFTYTLSDTIFKLAEEAGDTTERYATKSLKLTDFQTLYTLAQCTQDLSSDDCRICLVDINRKIPWFRLGSEGGRVLYPSCNLRFELFQFYRGSGEETQSPMPGSGEETQSPMPVNPSTPGLQGKRKVRLRTIILIIVPTIVSATLFFLGYYLVKRKARKSVKTILRENFGHESVTLEPLQFSLAVIEAATNNFSNDNRIGKGGFGEVYKGILSDGRQIAVKRLSKSSKQGANEFKNEVLLIAKLQHKNLVTFIGFCLEELEKILIYEYVPNKSLDYFLFDPQRAKMLSWFERYNIIGGIARGIYYLHELSRLKIIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQGSTNRIVGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIISGKKNLGLYEPHRVADGLLSCVWRQWRDQTPLSILDASINENYSEIEVIKCIQIGLLCVQQNPDDRPTMVAIVSYLSSHLIELPSPQEPALFLHGRKDPKALSINEMSVSQFLPR* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1619 917 Gene3D Phosphorylase Kinase; domain 1 567 681 - -
Gso16g1619 917 Pfam Salt stress response/antifungal 296 383 IPR002902 -
Gso16g1619 917 Pfam Salt stress response/antifungal 415 498 IPR002902 -
Gso16g1619 917 Pfam Salt stress response/antifungal 49 144 IPR002902 -
Gso16g1619 917 Pfam Salt stress response/antifungal 166 256 IPR002902 -
Gso16g1619 917 MobiDBLite consensus disorder prediction 507 530 - -
Gso16g1619 917 CDD STKc_IRAK 612 878 - -
Gso16g1619 917 MobiDBLite consensus disorder prediction 507 535 - -
Gso16g1619 917 ProSiteProfiles Protein kinase domain profile. 606 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1619 917 ProSitePatterns Protein kinases ATP-binding region signature. 612 634 IPR017441 GO:0005524
Gso16g1619 917 ProSiteProfiles Gnk2-homologous domain profile. 397 502 IPR002902 -
Gso16g1619 917 Gene3D - 288 386 IPR038408 -
Gso16g1619 917 Gene3D - 396 502 IPR038408 -
Gso16g1619 917 Gene3D - 40 147 IPR038408 -
Gso16g1619 917 Gene3D - 156 258 IPR038408 -
Gso16g1619 917 ProSiteProfiles Gnk2-homologous domain profile. 286 386 IPR002902 -
Gso16g1619 917 Gene3D Transferase(Phosphotransferase) domain 1 682 885 - -
Gso16g1619 917 SMART serkin_6 606 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1619 917 SUPERFAMILY Protein kinase-like (PK-like) 588 899 IPR011009 -
Gso16g1619 917 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 29 270 - -
Gso16g1619 917 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 531 901 - -
Gso16g1619 917 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 279 509 - -
Gso16g1619 917 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 29 270 - -
Gso16g1619 917 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 279 509 - -
Gso16g1619 917 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 531 901 - -
Gso16g1619 917 ProSiteProfiles Gnk2-homologous domain profile. 42 147 IPR002902 -
Gso16g1619 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Gso16g1619 917 Pfam Protein kinase domain 607 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1619 917 ProSiteProfiles Gnk2-homologous domain profile. 153 258 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1619 Gso-Chr16 36859685 36879891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1619 284 902 Receptor kinase-like Gene Family AT4G05200 43.975 8.95e-174 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso16g1619 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1619 - - gmx:100798426 1668.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1619 16 36859685 36879891 Gso9g1247 9 35817391 35822139 GST