Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1614 ATGCCATCCCGACAATTATCCACCCCATCAGACACACCCCATCCGCTGCCACCGCCACGTCATCACCACCACCACCATCACCACTTTCTGACTCCTCTCCTCGCCGCCACCGTCTCAACATGCTCCCTTTTCCTCCTCCTTCTCCTCTTCTGCCACCGCACCCTCACCCGCAAACGCGCTACCACCTACCCTCCTTCTCCGGCCACCACCTCCCCGCCGCACCGCCTCTCCTTCTCCGTCCTCCGCCGTGCCACCAACTCCTTCTCCACGCGCCTCGGCCACGGAGGCTTCGGCCCCGTCTTCGCCGGCACCCTCGCCGGCGCCCCCGTCGCCGTCAAGCTCATGGACTCCGCCACCAACCACCACCAGGGTGAGCGCGAGTTCCACAACGAACTCTTCTTCGCCTCGAAGCTCCTCTCCCGCCACGTCATCACCGCCACGCACTTCTGCTCCGACCCGAAACGACGCCGCTTCCTCCTGGTCTACGAGCTCATGCACAACGGCAACCTCCAAGACGCGCTTTTGCACCGCAAGTGCCCCGAACTCTCTAACTGGAACACGCGCTTCTCGATTATCCTCAACATAGCGAAAGGTGTTCACTTTCTTCACTCCTGCGACCCCCCTGTTATTCACGGCGACATTAAACCGAGCAACGTTTTGCTTGATCGCGATTTCTCGCCGAGAATTGGGGACTTTGGGCTTGCGAGGTTGAGCTCGGAGACTCCGAGGTTTGAAATTGAGGTTCTGGAATGTGGGAGTGTTGATAATGAAGAGAAGATGAAGAAGAAGGAGGAGGAGGAGGAGGTTGTTGTTGTTGTTGCTGATGATTGTGGATCGGTGGAGAGTGCTCATAGTGTTTTTATGGAGGATGGTGGTTTGGGTGTGGAGCAATCGCCTTCGCCGGAGATGGCGGCGATGACTTCGCCGGAGACGGGTTTGGCGGTGTCCGCCGCTGAGGCCTCGCCGGGGTTTGAGAAGGGTAGTGTGCAGAGTGAGAAGGAGGGTGTGAAGAAGATTAATGGGAGAGGGTTGAAGAGTAATTCTGTGAGGGATTGGTGGTGGAAGCATGAGAATGAGGTTGGGGTTGGGGAGAGTAAAAAAGTTAAGGATTATGTGATGGAGTGGATTGGGAGGGATGTGAATAAGGAAAGGGTGAAAAATGGAATTGAATATGGAGATGTGGTGGTAGGGAAGGAAGAGAAAAATAAGAAGGAGAAGAAGAGAAGGAAGAAGGAATTGGAATGGTGGGAATCAATGGAAGAGGAAAAGCTTGATGGGGTTATGAAGAGGAAGAGAAGGACGGTGAGGGAATGGTGGAAGGAGGAGCGTTTTGAGGAGAATGCGAAGACGACGACAAAGAAGAAGAAGAAAAAGAGGAAGGGTGGGAGTGTGAAGAGTGATGATGAGAAGTGTGGTGATGATTGGTGGATGAGTGATGATGCAATGGATAAGAGGAAGGGCAAGAGTAGGAGTAGGAACAACCGTGGGAACATGGATTGGTGGATGGATGGGTTGAGTGGTGAGTTATGGAGAGGGAGGAGGAATAATAGCTTTGATTCTGCTAGTGGAGAGATTCCAAAGAGTGGTGGTGTGAGTAGTACTCCTAGTATGAGGGGAACTGTGTGCTATGTTGCTCCTGAGTGTGGCTATGGTGGGGAAGTGTCTGAGAAGTCTGATGTGTATAGCTTTGGGGTGTTGTTGCTTGTGATCATTTCCCGGCGGCGCCCACTTCAGGTCAGCGGTTCGCCCTTGTCTGAGTTTCAGAGGGCGAATCTGTTGTCGTGGGCACGCCATTGCGCACGAAATGGGAAGCTTGTTGAGCTGATTGATGAGTCTACTGAGTTGTTGGATAAGGAGCAAGCTCTTCTCTGCATCAAGGTGGCGTTGCTTTGCTTGCTGAAGTCACCTGCTCGTCGTCCTTCAATTAAGGAGGTTGTGGGAATGCTCAGTGGGGAATTGGAGCCACCCCAATTGCCTGTCGAGTACTCACCTTCAACCCCTTCAAGGTTCCCTTTCAAGTCTAGGAGAAAAGGCAGGACTCAAATTTGTTTACAAGCTGCTGATCTGAGACACTGTAAAAGCTCTGATGTCTTCCCCTGCCACCTCTGA 2109 0.532 MPSRQLSTPSDTPHPLPPPRHHHHHHHHFLTPLLAATVSTCSLFLLLLLFCHRTLTRKRATTYPPSPATTSPPHRLSFSVLRRATNSFSTRLGHGGFGPVFAGTLAGAPVAVKLMDSATNHHQGEREFHNELFFASKLLSRHVITATHFCSDPKRRRFLLVYELMHNGNLQDALLHRKCPELSNWNTRFSIILNIAKGVHFLHSCDPPVIHGDIKPSNVLLDRDFSPRIGDFGLARLSSETPRFEIEVLECGSVDNEEKMKKKEEEEEVVVVVADDCGSVESAHSVFMEDGGLGVEQSPSPEMAAMTSPETGLAVSAAEASPGFEKGSVQSEKEGVKKINGRGLKSNSVRDWWWKHENEVGVGESKKVKDYVMEWIGRDVNKERVKNGIEYGDVVVGKEEKNKKEKKRRKKELEWWESMEEEKLDGVMKRKRRTVREWWKEERFEENAKTTTKKKKKKRKGGSVKSDDEKCGDDWWMSDDAMDKRKGKSRSRNNRGNMDWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGEVSEKSDVYSFGVLLLVIISRRRPLQVSGSPLSEFQRANLLSWARHCARNGKLVELIDESTELLDKEQALLCIKVALLCLLKSPARRPSIKEVVGMLSGELEPPQLPVEYSPSTPSRFPFKSRRKGRTQICLQAADLRHCKSSDVFPCHL* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1614 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Gso16g1614 702 SUPERFAMILY Protein kinase-like (PK-like) 65 670 IPR011009 -
Gso16g1614 702 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 679 - -
Gso16g1614 702 MobiDBLite consensus disorder prediction 1 25 - -
Gso16g1614 702 Gene3D Transferase(Phosphotransferase) domain 1 516 656 - -
Gso16g1614 702 Pfam Protein kinase domain 90 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1614 702 MobiDBLite consensus disorder prediction 449 469 - -
Gso16g1614 702 SMART serkin_6 86 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1614 702 ProSiteProfiles Protein kinase domain profile. 86 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1614 702 Gene3D Transferase(Phosphotransferase) domain 1 71 255 - -
Gso16g1614 702 Pfam Protein tyrosine and serine/threonine kinase 535 647 IPR001245 GO:0004672|GO:0006468
Gso16g1614 702 PANTHER OS07G0586332 PROTEIN 1 679 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1614 Gso-Chr16 36778404 36782080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1614 527 649 Receptor kinase-like Gene Family AT3G58690 33.333 2.83e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Gso16g1614 Pkinase 5.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1614 - - gsj:114390604 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1614 16 36778404 36782080 Gso9g1239 9 35538171 35541258 GST
Gso16g1614 16 36778404 36782080 Gso20g1223 20 42207315 42210493 PCT
Gso16g1614 16 36778404 36782080 Gso10g2155 10 48593369 48595724 PCT
Gso20g1223 20 42207315 42210493 Gso16g1614 16 36778404 36782080 PCT
Gso10g2155 10 48593369 48595724 Gso16g1614 16 36778404 36782080 PCT