Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1613 ATGCTTCCTTTGCAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCACCAGCAACACAAAATCTCCGAAGATCTAATTCTGGATGATTATGCTTCTCTGAATGTCAATGATTCTAACCAAAAATTCATCACTAGTAGCAGCAGCCAACCAACAAAGAAACTTTTCTATGGGGCAAATAAAAAGAATCATGACTCAAACGAACATAAGAAGAAGATGATTCATATGGAGATTGAAAGGAAAAGGAGACAAGAAATGGCTACCTTCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGCGAATTACATAAAGCACATGCAGAACAATATCAAAGAACTTGGTGCCAAGAGAGATGAAATGAAGAAACTCTCCAATCATTGCAATAATATGGAAAATAACCATGCGGGCTTGCATACATCTTGCAACTTTACTATCCATGAGAATAATGGTATTATGGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAAGCCTAAAATTTCAAAGTTACTACAGTTTTTGACTGAAGAAGGATTTGAAGTTGTTAGTTGCTTTTCAACAGAAGTCAATGGCAGATTGCTCCACAGTGTGCAGTGTGAGGTTAACAATTCCAACAGCGTAGATCTATCTGAGCTGCGAAAGAAAGTTTCCAATGCATTTCCAACATTTAGATGTTCTGATTAA 741 0.3873 MLPLQRGNELVIQFSNSPHHQQHKISEDLILDDYASLNVNDSNQKFITSSSSQPTKKLFYGANKKNHDSNEHKKKMIHMEIERKRRQEMATFYASLRSLLPLEFIKGKRSISDHMNEAANYIKHMQNNIKELGAKRDEMKKLSNHCNNMENNHAGLHTSCNFTIHENNGIMGIEITSGFREEKPKISKLLQFLTEEGFEVVSCFSTEVNGRLLHSVQCEVNNSNSVDLSELRKKVSNAFPTFRCSD* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1613 246 CDD bHLH_AtORG2_like 74 145 - -
Gso16g1613 246 Coils Coil 115 152 - -
Gso16g1613 246 SMART finulus 79 131 IPR011598 GO:0046983
Gso16g1613 246 Pfam Helix-loop-helix DNA-binding domain 75 126 IPR011598 GO:0046983
Gso16g1613 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Gso16g1613 246 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 244 IPR015660 GO:0003700|GO:0006357
Gso16g1613 246 Gene3D - 64 160 IPR036638 GO:0046983
Gso16g1613 246 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 244 - -
Gso16g1613 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 144 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1613 Gso-Chr16 36772365 36774137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1613 68 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.714 1.28e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso16g1613 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1613 - - gmx:100780888 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1613 16 36772365 36774137 Gso9g1238 9 35531021 35533003 GST
Gso16g1613 16 36772365 36774137 Gso20g1224 20 42216477 42217826 PCT
Gso16g1613 16 36772365 36774137 Gso10g2154 10 48587124 48590752 PCT
Gso20g1224 20 42216477 42217826 Gso16g1613 16 36772365 36774137 PCT
Gso10g2154 10 48587124 48590752 Gso16g1613 16 36772365 36774137 PCT