Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1612 ATGGCAAGGAGAAATAGTGGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAATAAGCTTGCCATGGATGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAATCTCTGCACCACCCTTAGATCGCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAGTAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGATGAGTAATATTTGTCCTGAGAATATTGAAAGCTCTAGTACTATTCATCTTCCACCCTTGGTTTCTATTCATCCTTTCCCCGGAGGACTTGAGATTATGTGCAGTTACAGCTTTGGGAAAAGTTTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCAGAGTATCCAATTCATTCGAATATGGCTGGCACTGATTACACTGAATTGCAAATGAAGCTTATGGAGATAATATCATCTTCAACTATCAGATGCACGGATTGA 630 0.3937 MARRNSGKHLLVGEKEDYNKLAMDDENKKWMHKETERQRRQEMGNLCTTLRSLLPLEYIKGKRSTSDHVNEAMNYINHLQSKVKQLQAKRDELVKVSNLMSNICPENIESSSTIHLPPLVSIHPFPGGLEIMCSYSFGKSLFPMSRVLDILLKEGLNVVSTTSIRRDGRFIHTIRSEYPIHSNMAGTDYTELQMKLMEIISSSTIRCTD* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1612 209 Pfam Helix-loop-helix DNA-binding domain 29 80 IPR011598 GO:0046983
Gso16g1612 209 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 205 IPR015660 GO:0003700|GO:0006357
Gso16g1612 209 CDD bHLH_AtORG2_like 28 98 - -
Gso16g1612 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 79 IPR011598 GO:0046983
Gso16g1612 209 SMART finulus 33 85 IPR011598 GO:0046983
Gso16g1612 209 Gene3D - 19 104 IPR036638 GO:0046983
Gso16g1612 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 96 IPR036638 GO:0046983
Gso16g1612 209 PANTHER TRANSCRIPTION FACTOR 1 205 - -
Gso16g1612 209 Coils Coil 69 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1612 Gso-Chr16 36749402 36757479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1612 32 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.909 2.84e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso16g1612 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1612 - - gsj:114390355 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1612 16 36749402 36757479 Gso9g1237 9 35501081 35502787 GST
Gso16g1612 16 36749402 36757479 Gso20g1225 20 42231718 42233390 PCT
Gso16g1612 16 36749402 36757479 Gso10g2153 10 48570714 48572233 PCT
Gso20g1225 20 42231718 42233390 Gso16g1612 16 36749402 36757479 PCT
Gso10g2153 10 48570714 48572233 Gso16g1612 16 36749402 36757479 PCT