Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1611 ATGCACTTGAAACAATACTGTTGTTTCCTCAAAGATGAAAGGCAAAGCAAAATACAGGTTGCCAACAAGAAGAACAATAGGGACTATCCATGGGAAATGTACACGTTGAAGGAGTTGCTTCGTGCAACAAACAACTTTGATCAAGATAATAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAAGTAAAGGCGTTCAGATTGCAGTGAAGCGGTTGAAGACAATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAAAATTTGTTGGGATTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAACCATAGCTTGCTCACCCATTTGCATGGTCCACTTGCTAAGAAATGTCAGCTAGATTGGCCTAGAAGAATGAGCATAGCAATTGGAACTGCTGAAGGTTTAGCGTATCTGCACCATGAATCAACTCCTCACATCATACACAGAGATATTAAGGCAAGCAATGTTCTTCTAGACGCTGAATTTCAAGCCAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCAGATGGTGTGACCCATCTTACCACAAAAGTTAAAGGCACCCTAGGATATTTGGCACCAGAATACGCCATGTGGGGGAAGGTTTCTGAGAGCTGTGATGTTTACAGCTTTGGAATTTTACTTTTGGAGATTATTAGTGCCAAGAAACCAATTGAGAAATTCCCTGGAGAAGTGAAAAGGGACATTGTTCAATGGGTCACACCATATATCAACAAAGGCCTCTTCAACAACATTGCTGATCCAAAGTTGAAGGGGAAATTTGATTTGGAGCAATTGAAAAACGTTACCACCATAGCTCTTAGATGCACCGATAGTAGTGCGGATAAGAGGCCTAGCATGAAAGAGGTGGTGGATTGGCTCAAGAATGGTGTAGGGAACACTTAA 975 0.4185 MHLKQYCCFLKDERQSKIQVANKKNNRDYPWEMYTLKELLRATNNFDQDNKIGEGGFGSVYFGRTSKGVQIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKKCQLDWPRRMSIAIGTAEGLAYLHHESTPHIIHRDIKASNVLLDAEFQAKVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGEVKRDIVQWVTPYINKGLFNNIADPKLKGKFDLEQLKNVTTIALRCTDSSADKRPSMKEVVDWLKNGVGNT* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1611 324 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 322 - -
Gso16g1611 324 Gene3D Phosphorylase Kinase; domain 1 6 121 - -
Gso16g1611 324 PANTHER OS01G0253100 PROTEIN 5 322 IPR045271 GO:0004714|GO:0006468
Gso16g1611 324 SUPERFAMILY Protein kinase-like (PK-like) 27 319 IPR011009 -
Gso16g1611 324 Pfam Protein kinase domain 47 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1611 324 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1611 324 Gene3D Transferase(Phosphotransferase) domain 1 122 321 - -
Gso16g1611 324 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1611 324 PIRSF ILK 11 321 - -
Gso16g1611 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Gso16g1611 324 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Gso16g1611 324 CDD STKc_IRAK 52 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1611 Gso-Chr16 36745044 36748319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1611 33 313 Trihelix Transcription Factor Family AT1G68690 45.263 9.26e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gso16g1611 Pkinase 6.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1611 - - gmx:100793659 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1611 16 36745044 36748319 Gso9g1236 9 35469382 35471925 GST
Gso16g1611 16 36745044 36748319 Gso20g1226 20 42249330 42251356 PCT
Gso16g1611 16 36745044 36748319 Gso10g2152 10 48560047 48562043 PCT
Gso20g1226 20 42249330 42251356 Gso16g1611 16 36745044 36748319 PCT
Gso10g2152 10 48560047 48562043 Gso16g1611 16 36745044 36748319 PCT