Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1606 ATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACATTCTCAAAACGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTATGTGACGCTGAAGTTGCCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACAGCAAGTCGCAGACTGACGATTCATTGGAACACGATTCACAGAGTTCATACCATGAATTCTTGAAATTAAGAGCGAAATATGAATCACTTGAGCTGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGATTTGCAGAGCCTTGAGAAACAACTAGACATAACGCTCGCACTAACTCGACAGCATCAAACGAAGAAACTCTTGGCACGAGCAGATGAATTACGCGAAAAGGTTCACAAGTTGGAGGATCTTAACAAACAATTAGAGTCCAAGGAAAAAGATGAATTCTCAAGCTTCATCCTTGACAATAACAATTACATTCAAGTGCATGCTACACAAGGTGATCAATTTGAGTCTGGGACAACACTAAACACATGGTTTCAACGCCAAGATTCAAAGGAAAAAGCAATTGATACCAAGACAGACGGTAGTCAAAGCAGTCACAACAAAAACAAAGGATGGCTATTGTGA 708 0.4096 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYSKSQTDDSLEHDSQSSYHEFLKLRAKYESLELTQRHFQGEELEPLSFKDLQSLEKQLDITLALTRQHQTKKLLARADELREKVHKLEDLNKQLESKEKDEFSSFILDNNNYIQVHATQGDQFESGTTLNTWFQRQDSKEKAIDTKTDGSQSSHNKNKGWLL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1606 235 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Gso16g1606 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso16g1606 235 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso16g1606 235 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso16g1606 235 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gso16g1606 235 Coils Coil 143 173 - -
Gso16g1606 235 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gso16g1606 235 MobiDBLite consensus disorder prediction 213 235 - -
Gso16g1606 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso16g1606 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso16g1606 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 234 - -
Gso16g1606 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso16g1606 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso16g1606 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso16g1606 235 PANTHER MADS BOX PROTEIN 1 234 - -
Gso16g1606 235 MobiDBLite consensus disorder prediction 221 235 - -
Gso16g1606 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1606 Gso-Chr16 36649402 36657029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1606 1 221 MADS-box Gene Family AT2G45650 47.511 1.28e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso16g1606 K-box 7.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1606 K09264 - gmx:100779279 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1606 16 36649402 36657029 Gso16g1606 16 36649402 36657029 ECH
Gso16g1606 16 36649402 36657029 Gso9g1227 9 35265195 35275284 GST
Gso10g2149 10 48513213 48518016 Gso16g1606 16 36649402 36657029 PCT