Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1594 ATGGACGTGGACGGTGGCAACAAGCGCGTGTACAACCGCCTCGGTGGGGACGCCAAGCACCAGAAAGTGTGCTTCCACTGGCAAGCGGGCAAGTGCAACCGCTACCCGTGCCCCTTCCTGCACAGCGAATTGCCCGCGAATTCTCACCACGCCAATGGCGCCTCCTCGAAGCGGGCATACGACAATTCGGGCTTCTCGGGCCCGCGCCGCAGCCCCAGTTTCAACAACACGTGGGGCCGTGGCGGGAGCCGTGGTGGCGGTGGTGCCGGTGCCGGTGCCGGTAGAGGGGTGGTGGTGAAGGCGGAGAAAGTCTGTAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGCAAGTTCCTTCACACTTGGAGTGTGGGGGATGGGTTTTCTTTGCTGACCCAGCTTGAAGGGCATCAGAAGGCTGTGAGTGCAATTGCCTTTCCCTCTGGTTCAGATAAGCTGTATACCGGAAGCACTGATGAGACTGCAAGGATTTGGGACTGCCAATCTGGAAAGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCTTGGGTCTTTGTTGGGATACCCAATTTTGTCAAGGCCTGGAACACACAAAATTTATCAGAGCTAAGTCTTAATGGTCCTGTTGGACAAGTATATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGGACGGATCTATATTGGCATGGAAGTTTAATGTAGCTACCAACTGCTTTGAGCCGGCTGCATCACTTAAAGGTCATTCTCGGGGTGTTGTTTCATTAGTTGTTGGTGCCAATAGACTTTACTCTGGTTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTTTATCTTGTTCATTGGATAAAACAGTGAAGGGTATACTTACCCTATGTGGGATGCATGATTCACAAGGCAAACCCATTTTGCTGTGCGCTTGCAATGATAATACTGTGCACCTCTATGATCTGCCATCATTTGCAGAGAGAGGCAAGATATTGACAAAAAAAGAGGTACGAGCAATTCAGATAGGGCCTAACGGCATATTCTTCACTGGTGACGGTACTGGTGAAGTAAGAGTGTGGAATTGGATAGCGGAGGCAACTACTACCACCCAATAA 1224 0.4926 MDVDGGNKRVYNRLGGDAKHQKVCFHWQAGKCNRYPCPFLHSELPANSHHANGASSKRAYDNSGFSGPRRSPSFNNTWGRGGSRGGGGAGAGAGRGVVVKAEKVCNYWIQGNCSYGERCKFLHTWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKGILTLCGMHDSQGKPILLCACNDNTVHLYDLPSFAERGKILTKKEVRAIQIGPNGIFFTGDGTGEVRVWNWIAEATTTTQ* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1594 407 ProSitePatterns Trp-Asp (WD) repeats signature. 277 291 IPR019775 -
Gso16g1594 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 293 - -
Gso16g1594 407 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 405 - -
Gso16g1594 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 299 IPR001680 GO:0005515
Gso16g1594 407 MobiDBLite consensus disorder prediction 50 92 - -
Gso16g1594 407 ProSiteProfiles Zinc finger C3H1-type profile. 100 126 IPR000571 GO:0046872
Gso16g1594 407 SMART WD40_4 253 290 IPR001680 GO:0005515
Gso16g1594 407 SMART WD40_4 209 246 IPR001680 GO:0005515
Gso16g1594 407 SMART WD40_4 293 357 IPR001680 GO:0005515
Gso16g1594 407 SMART WD40_4 360 397 IPR001680 GO:0005515
Gso16g1594 407 SMART WD40_4 130 169 IPR001680 GO:0005515
Gso16g1594 407 Gene3D - 215 329 IPR015943 GO:0005515
Gso16g1594 407 Pfam Zinc finger domain 105 123 - -
Gso16g1594 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 178 IPR001680 GO:0005515
Gso16g1594 407 MobiDBLite consensus disorder prediction 50 80 - -
Gso16g1594 407 Gene3D - 330 407 IPR015943 GO:0005515
Gso16g1594 407 Gene3D - 115 214 IPR015943 GO:0005515
Gso16g1594 407 Pfam WD domain, G-beta repeat 256 290 IPR001680 GO:0005515
Gso16g1594 407 Pfam WD domain, G-beta repeat 295 327 IPR001680 GO:0005515
Gso16g1594 407 Pfam WD domain, G-beta repeat 133 169 IPR001680 GO:0005515
Gso16g1594 407 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Gso16g1594 407 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Gso16g1594 407 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Gso16g1594 407 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Gso16g1594 407 SUPERFAMILY WD40 repeat-like 131 398 IPR036322 GO:0005515
Gso16g1594 407 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Gso16g1594 407 SMART c3hfinal6 101 125 IPR000571 GO:0046872
Gso16g1594 407 PANTHER - 1 405 IPR044715 -
Gso16g1594 407 SUPERFAMILY CCCH zinc finger 101 124 IPR036855 GO:0046872
Gso16g1594 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1594 Gso-Chr16 36531820 36537826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1594 122 327 Miscellaneous Gene Families AT5G08390 23.697 2.97e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso16g1594 WD40 8.2e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1594 - - gmx:100775542 802.742