Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1591 ATGTATACCTTGAACCACTCTTCATATTTGTACCATGTTTCCCCTGAGCTCTCCTCTTCCTTGGACTCGTCCTCGCCGGCTTCCGAGGGCTCTCGCGGCGTGGCATTTTCCGACGAGGAGGTGCGGCTGGCGGTGAGGCACCCGAAGAAGCGGGCCGGGCGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGGGGCGTGAGGAGGAGGAACACGGATAAGTGGGTAAGTGAGGTGAGGGAGCCCAACAAAAAGACCAGGATTTGGCTGGGGACTTTTCCCACGCCGGAGATGGCGGCACGGGCCCACGACGTGGCGGCAATGGCCCTGAGGGGCCGGTATGCCTGTCTCAACTTCGCTGACTCGACGTGGCGGTTACCAATTCCCGCCACTGCTAACGCAAAGGATATACAGAAAGCAGCAGCAGAGGCTGCCGAGGCTTTCAGACCAAGTCAGACCTTAGAAAATACGAATACAAAGCAAGAGTGTGTAAAAGTGGTGACGACAACAACGATCACAGAACAAAAACGAGGAATGTTTTATACGGAGGAAGAAGAGCAAGTGTTAGATATGCCTGAGTTGCTTAGGAATATGGTGCTTATGTCCCCAACACATTGCATAGGGTATGAGTATGAAGATGCTGACTTGGATGCTCAAGATGCTGAGGTGTCCCTATGGAGTTTCTCAATTTAA 696 0.5374 MYTLNHSSYLYHVSPELSSSLDSSSPASEGSRGVAFSDEEVRLAVRHPKKRAGRKKFRETRHPVYRGVRRRNTDKWVSEVREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSTWRLPIPATANAKDIQKAAAEAAEAFRPSQTLENTNTKQECVKVVTTTTITEQKRGMFYTEEEEQVLDMPELLRNMVLMSPTHCIGYEYEDADLDAQDAEVSLWSFSI* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1591 231 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gso16g1591 231 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Gso16g1591 231 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gso16g1591 231 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 231 - -
Gso16g1591 231 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gso16g1591 231 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gso16g1591 231 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 231 IPR045277 GO:0003700
Gso16g1591 231 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Gso16g1591 231 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Gso16g1591 231 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1591 Gso-Chr16 36511323 36512505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1591 10 229 AP2-EREBP Transcription Factor Family AT5G51990 51.965 3.19e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso16g1591 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1591 - - gmx:100819565 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1591 16 36511323 36512505 Gso9g1213 9 34977416 34978612 GST
Gso16g1591 16 36511323 36512505 Gso20g1241 20 42453922 42455192 PCT
Gso16g1591 16 36511323 36512505 Gso10g2136 10 48385695 48387103 PCT
Gso20g1241 20 42453922 42455192 Gso16g1591 16 36511323 36512505 PCT
Gso10g2136 10 48385695 48387103 Gso16g1591 16 36511323 36512505 PCT