Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1590 ATGACACATGAGAGAGTTGATATCATCAGTGTTTTGGTTGTGGATGACGATAAAACTTCTTTGGCCATTGTTAGCAATATACTCACCTCATTAGGATACAAAGTTCTCACTGCCAACAGTGCCCTAAATGCTTTGGAGATTCTTAGAGAGTTCAGAGGCTTTATTGATCTCCTCATTACAGAACTTCATATATCTGGGATGAATGGATTTGAATTTCAAAAGTATGTTGAAAATCAATTCCACTTACCAGTGATAATTATGTCTTCAGATGGAAGAAATAGTGTAATTTCCAAGAGTTTAGCAAATGGTGCCGCACACTATATTTTGAAACCCTTTTCTGCAGATGACTTCAAAGACATTTGGCAGTATGCAAGGAAACTAACTTTTCAAAATATTGAAGGGGGGTCAATACCAGGTGATAACACTTCTATTCAGGATGTTCACTCTGCAATATCATCGAATGTGAGCAAGAGAAAAAGGAAGTGTTTCCCAAGAAAGAGTACCCAAATGAATAAGGAAGGCCAAAGTGGAGAAAGCTCTACGCTTGTAAAGAAACCAAAGGTTGTTTGGACACCATATCTTCACAACCGCTTTCTGCTTGCCATAAAACAAATTGGATTGGAGAAGGCTGTTCCAAAGACAATTCTTCAAGTCATGAATGTGCCAAACTTGACAAGAGAAAATGTTGCCAGTCACTTACAGAAGTATCGCATATTCCTGCGAAAAGTAGCAGATAAAGGATTGCTTGAGGGCTTATCTAACAGGGATCTAAGGTCAAGGTTTGCCTATGGCCTTTCAGCATCAATGATCAAAGACATCCAAGCAAAAACTGCGAAGTCGCGTGTTACTGCGCAGCAATATATGAAAAGAATAGCACATCAATCAGTGTATGGAGGAATAGCCAATGCTGTTAAATCTTACAACCATGTTTCAAGTGTGACTAATACTCCACTTGGAAGAAGCCATCAATTTCCCCATCCATATCACAAAGGCTTGAATATGATGCTTCACAACCAACATGGTAGTTCTTCGGATCAAGCAAGGCTTAGAGCACAATCAAGCTTTGGAAGCAATGTTGGGACCAATAATATCCAGCAAAATACGTTGGGAAGCTATGCAAACCAACCATATTATGCACAAAGCTCTTACAACAATGTTGGTGTTGTCTTTCCTTCAGATGGAGTAACGAGACATGGCTTGATGACTTCCACAAATGGCCTAAGAGGAGGTGTGAACTATGGTGGCAACCAATTGATGTATCCAAACTATGCTTCATTGGGAAATCAACACAAGTTTAGCTGTGGTCAAGGAAACTGGAACATTGGATCTTTGAATTACAACAGGAGCTTTGGCTTGATCAATGAGACGAGTGAAAATGTGAATAAGAATGTGTTAAGTTTTGGGCAAGGAAATTTTGATTTGGCTCAAGGAGGGTTTGCTTCTACTTCTAGTGCTGGGGAGTGTTGGTCAAAGGAGCTTCCAGCAGAAAATATTCAAGGAAACCCAACACTGCATCAACAACTACAAGGCAATTTTGCAGAAAATGATATTGGTACTTCCATTGGTGAGGGCAATGTCAACCTCCTGGACGAAGATGACTTTTCTAATCTTTTCATGATGCTAGATGAAATGGATCTTCTTAATGAGACTGAAGAGAACCATAATGCAAATGACTTCTTGAAGTCTGACTTTTCAAGCTCTAATCACGCTGTGCAGTCCCTTGAACAGATGGGAGGTGATGATGGATATGCAAACATGGAACACTTGAACAGGTTCATGATGAATGATGATGTCTCCTCAGGAAGTAACTCGGCTACTGATCAGGATTGGGATTTCGAACTTATTGAAGCCCTGTTCGGTGACGAGAAAAATCAGGGAGAATGA 1884 0.4002 MTHERVDIISVLVVDDDKTSLAIVSNILTSLGYKVLTANSALNALEILREFRGFIDLLITELHISGMNGFEFQKYVENQFHLPVIIMSSDGRNSVISKSLANGAAHYILKPFSADDFKDIWQYARKLTFQNIEGGSIPGDNTSIQDVHSAISSNVSKRKRKCFPRKSTQMNKEGQSGESSTLVKKPKVVWTPYLHNRFLLAIKQIGLEKAVPKTILQVMNVPNLTRENVASHLQKYRIFLRKVADKGLLEGLSNRDLRSRFAYGLSASMIKDIQAKTAKSRVTAQQYMKRIAHQSVYGGIANAVKSYNHVSSVTNTPLGRSHQFPHPYHKGLNMMLHNQHGSSSDQARLRAQSSFGSNVGTNNIQQNTLGSYANQPYYAQSSYNNVGVVFPSDGVTRHGLMTSTNGLRGGVNYGGNQLMYPNYASLGNQHKFSCGQGNWNIGSLNYNRSFGLINETSENVNKNVLSFGQGNFDLAQGGFASTSSAGECWSKELPAENIQGNPTLHQQLQGNFAENDIGTSIGEGNVNLLDEDDFSNLFMMLDEMDLLNETEENHNANDFLKSDFSSSNHAVQSLEQMGGDDGYANMEHLNRFMMNDDVSSGSNSATDQDWDFELIEALFGDEKNQGE* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1590 627 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 185 238 IPR006447 GO:0003677
Gso16g1590 627 PANTHER RESPONSE REGULATOR 23-RELATED 9 552 - -
Gso16g1590 627 Pfam Response regulator receiver domain 11 119 IPR001789 GO:0000160
Gso16g1590 627 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 552 IPR045279 GO:0009736
Gso16g1590 627 SMART REC_2 9 121 IPR001789 GO:0000160
Gso16g1590 627 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Gso16g1590 627 SUPERFAMILY CheY-like 10 126 IPR011006 -
Gso16g1590 627 Gene3D - 181 244 - -
Gso16g1590 627 Pfam Myb-like DNA-binding domain 188 237 IPR001005 -
Gso16g1590 627 Gene3D - 10 155 - -
Gso16g1590 627 CDD REC_typeB_ARR-like 11 124 - -
Gso16g1590 627 SUPERFAMILY Homeodomain-like 183 242 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1590 Gso-Chr16 36483614 36489937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1590 9 248 Response Regulator Gene Family AT4G31920 38.525 3.12e-47 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso16g1590 Response_reg 4.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1590 - - gmx:102663776 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1590 16 36483614 36489937 Gso16g1590 16 36483614 36489937 ECH