Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1575 ATGGGGATGAGTCAACTGGGTCTTTTTGATTTGGTACCATGCATTTCAAAACAAAGGAGAATGGAAGGCCATAGCGAGATGGGTCTAATGGGAGAAAGTTTTGATACTAGTAATTTGCTAGGGAGGATGAGGGATGACGAATATGAAAGCCGGTCCGGAAGTGATAATTTTGATGGCGGATCTGGTGATGATCAAGATGCTGGGGATGATCAGCCACATAAAAAGAAGAAGAAATACCATAGGCACACCCCTCAACAAATTCAGGAGCTTGAAGCGTTTTTCAAGGAGTGTCCTCATCCCGACGAGAAGCAAAGAACAGATCTTAGCAAGAAGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAATGACAAGCTCCGAGCTGAGAACAGTGTAATGAAGGATGCTTTGGCAAATCCGATATGTAACAACTGTGGTGGCCCAGCTATTCCTGGTCAAATTTCATTGGAGGAGCACCAAACTAGAATGGAAAATGCCCGACTGAAGGATGAATTGAACCGAATATGTGCATTGGCAAACAAGTTCCTGGGCCGGCCCCTCTCACCACTGGCCAGTCCCATGGCTCTGCCACCCTCAAATTCTGGTCTAGAACTTGCTATTGGAAGAAACGGACTTGGTGGTTCAAGCAATTTTGGCATGCCCTTGCCAATGGGATTTGATGTGGGAGATGGAGCTTTGGGCTCCTCTCCTGCGATGTCTACTATGGGTGCTAGATCACCAATGGGAATGATGGGAAACGAAATCCAGCTTGAGAGATCCATGCTTTTAGACCTTGCACTGAGTGCTATGAATGAATTAATTAAGATGGCTCAGCCAGATACCTCTCTTTGGATTAAAAGCTCTGATGGCAGGAATGAAGTACTGAACCATGATGAGTATGCAAGACTGTTTTCTCCTTATATTGGATCAAAACCTGCTGCTGGTTATGTGACTGAAGCTACAAGAGGAACTGGAGTAGTATCAGCCAGCAGTTTGGGCCTTGTTGAAATATTGATGGATGCGGATCAATGGTCGGAGATGTTTTCATCTATGATTGCTAGTGCTGCCACTGTGGAAGTACTATCTAGTGGCACGGGTGGAACCAGAAGTGGAGCGTTGCAAGTGATGCTTGCTGAGGTTCAATTGCTTTCTCCACTAGTCCCTGCTCGTCAAGTGAGTTTCCTCAGGTTTTGCAAGCAGCACGCTGAAGGTTTATGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCGTAATGTTACCAATTCACATCCATTAATGAGCTGCAGGAGGCTTCCCTCGGGCTGTGTTATTCAGGACATGCCCAATGGTTTTTCCAATATTACTTGGGTTGAACATTCCCAATATGATGAGAGTGTCATCCACCAACTTTATCGCCCATTGGTTAGTTCTGGCATTGGTTTTGGTGCTCAGAGATGGATTGCCACCCTCCTAAGGCAGTGTGACTGCTTGGCAATCCTCAGGTCTCCTCAAGGCCCATCTGAGGACCCCACAGCCCAAGCGGGTAGGACAAACATGATGAAGCTCGCACAACGCATGACCGAGTGCTTCTGCTCAGGGATCTGTGCTTCATCTGCTTGCAAGTGGGACATACTGCACATTGGTAATCTGGCTGATGACATGAGAATCATGGCCCGGAAAATCGATGACCCAACTGAGGCTCCTGGCATTGTGCTGAGTGCTTCAACTTCTGTTTGGATGCCGGTGTCACGGAAAAGGGTGTTTGATTTTCTGCGTGATGAAAATTTGAGAGGTGAGTGGGACCTGCTGTCCAAAGATGGACCAATGAAGGAGATGCTCCATATTGCTAAAGGACAAGACCGTGGAAATTGTGTTTCCATCCTTCATTCTGCTAATAGCGAGTGCAATGTGCTATATCTGCAAGAGTCATGGAGTGATGCCTCTGGCTCGATGGTAGTGTATTCCCCGATCAACATGCAAGCCTTGCAGATGGTGATGAGCTGTGGAGATTCATCATTTGTCCCTCTCCGTCCATCAGGCTTTGCTATTCTGCCAGATGGCACTTCAAACAACGGTGATGGCAGTGACGGTGGTGGCAGCTGCTTGCTTACAGTTGGGTTACAAATGTTGCCAAATGGCAACCACCAATCAGCCAAGTTCACAATGGAGTCAGTTGATGCTGTCAATAACCTGATCTCATTTACCATTCAGAAGGTCAAAGATGCACTTGGAGTTGCATGA 2289 0.4679 MGMSQLGLFDLVPCISKQRRMEGHSEMGLMGESFDTSNLLGRMRDDEYESRSGSDNFDGGSGDDQDAGDDQPHKKKKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKKLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKDALANPICNNCGGPAIPGQISLEEHQTRMENARLKDELNRICALANKFLGRPLSPLASPMALPPSNSGLELAIGRNGLGGSSNFGMPLPMGFDVGDGALGSSPAMSTMGARSPMGMMGNEIQLERSMLLDLALSAMNELIKMAQPDTSLWIKSSDGRNEVLNHDEYARLFSPYIGSKPAAGYVTEATRGTGVVSASSLGLVEILMDADQWSEMFSSMIASAATVEVLSSGTGGTRSGALQVMLAEVQLLSPLVPARQVSFLRFCKQHAEGLWAVVDVSVDIGRNVTNSHPLMSCRRLPSGCVIQDMPNGFSNITWVEHSQYDESVIHQLYRPLVSSGIGFGAQRWIATLLRQCDCLAILRSPQGPSEDPTAQAGRTNMMKLAQRMTECFCSGICASSACKWDILHIGNLADDMRIMARKIDDPTEAPGIVLSASTSVWMPVSRKRVFDFLRDENLRGEWDLLSKDGPMKEMLHIAKGQDRGNCVSILHSANSECNVLYLQESWSDASGSMVVYSPINMQALQMVMSCGDSSFVPLRPSGFAILPDGTSNNGDGSDGGGSCLLTVGLQMLPNGNHQSAKFTMESVDAVNNLISFTIQKVKDALGVA* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1575 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 760 IPR042160 -
Gso16g1575 762 SMART START_1 287 512 IPR002913 GO:0008289
Gso16g1575 762 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Gso16g1575 762 Gene3D - 287 498 IPR023393 -
Gso16g1575 762 Pfam Homeodomain 76 131 IPR001356 GO:0003677
Gso16g1575 762 MobiDBLite consensus disorder prediction 38 83 - -
Gso16g1575 762 SUPERFAMILY Homeodomain-like 56 133 IPR009057 -
Gso16g1575 762 CDD START_ArGLABRA2_like 282 510 - -
Gso16g1575 762 Pfam START domain 288 511 IPR002913 GO:0008289
Gso16g1575 762 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Gso16g1575 762 Coils Coil 127 154 - -
Gso16g1575 762 Gene3D - 63 149 - -
Gso16g1575 762 MobiDBLite consensus disorder prediction 39 53 - -
Gso16g1575 762 ProSiteProfiles START domain profile. 278 515 IPR002913 GO:0008289
Gso16g1575 762 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 18 760 - -
Gso16g1575 762 CDD homeodomain 80 133 IPR001356 GO:0003677
Gso16g1575 762 SUPERFAMILY Bet v1-like 530 734 - -
Gso16g1575 762 SUPERFAMILY Bet v1-like 280 512 - -
Gso16g1575 762 SMART HOX_1 75 137 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1575 Gso-Chr16 36284735 36290988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1575 21 759 Homeobox Transcription Factor Family AT3G61150 52.680 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso16g1575 START 3.4e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1575 K09338 - gmx:100784656 1445.64