LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso16g1571	ATGGCTCCACCGCCGCCGGTGGAACACAACGGCGACTCCGCCGCTACCGCCTCCGCCTCCGCCTCCGCGGAGTCTCAGAGATCAATTCCCACGCCCTTTCTCACCAAAACCTATCAACTCGTCGACGACCAATCCATCGACGACGTTATTTCCTGGAACGACGACGGGTCAACGTTTATCGTCTGGAACCCTACCGTTTTCGCCAGAGACTTGCTTCCTAAATTTTTCAAACACAATAATTTCTCTAGCTTCGTTCGCCAACTCAACACTTACGGATTCAGGAAAGTTGTGCCTGATCGGTGGGAGTTCTCGAACGATTATTTCCGCCGAGGCGAGAAGCGGCTTCTTTGCGAAATTCAGCGGCGGAAGATCTCATCGCCGGCGCCGTCTCCGACTGCGCCGACGACGGTTACGGTGCCGATGCCGTTGACCGCGATACCGATCATATCGCCGTCGAACTCTGGCGAGGAGCAGGTGATATCGTCGAACTCGTCGCCGTTGCGAGCGCCGGCGGAGCTTCTCGACGAGAACGAGCGGCTTAGGAAAGAGAACGTTCAGTTAACGAAAGAACTCGCCGAGATGAGATCGCTCTGCAACAACATATATTCTCTCATGTCAAGCTACGGAAACAAAAACGGAAACAGCAACGGCAGTTACCAAACTGACGGCGGCGCCGGTGGAGCACAGGGAAGCAGGGAGTCCGGCATGACGGCGGTGAAGCCACTGGATTTGATGCCGGTGAAACGGAGCTCCGGCGAGGACGCGGCGGATACGGTGCCGAAGGAGATAAATCTAATTCCGAATCCGAAGCTGTTTGGCGTGGCGATTGGAGCGAAGCGAGCGAGAGAGGGAGGAGGAGGAAGTGGAAGTGGTCGAGATTGCGGAGGAGGAGGAGGAGGAGGAGAGGAAGATACCCTGCTGCGCCTGCATCACGTGGGTTCTGCAGACGTGAAATCTGAGCCGTTGGATTGCCAGAACCATCGCGAGAATCAGGAAACGCCGTGGTTGAGTCCGTGTCACAGGACAAATCAAAGGGTGTGCAACTGA	1047	0.5616	MAPPPPVEHNGDSAATASASASAESQRSIPTPFLTKTYQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDYFRRGEKRLLCEIQRRKISSPAPSPTAPTTVTVPMPLTAIPIISPSNSGEEQVISSNSSPLRAPAELLDENERLRKENVQLTKELAEMRSLCNNIYSLMSSYGNKNGNSNGSYQTDGGAGGAQGSRESGMTAVKPLDLMPVKRSSGEDAADTVPKEINLIPNPKLFGVAIGAKRAREGGGGSGSGRDCGGGGGGGEEDTLLRLHHVGSADVKSEPLDCQNHRENQETPWLSPCHRTNQRVCN*	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso16g1571	348	SMART	hsfneu3	29	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso16g1571	348	MobiDBLite	consensus disorder prediction	13	28	-	-
	Gso16g1571	348	Pfam	HSF-type DNA-binding	33	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso16g1571	348	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	333	IPR027725	-
	Gso16g1571	348	MobiDBLite	consensus disorder prediction	1	28	-	-
	Gso16g1571	348	Gene3D	-	25	123	IPR036388	-
	Gso16g1571	348	MobiDBLite	consensus disorder prediction	213	238	-	-
	Gso16g1571	348	ProSitePatterns	HSF-type DNA-binding domain signature.	72	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso16g1571	348	SUPERFAMILY	"Winged helix" DNA-binding domain	30	122	IPR036390	-
	Gso16g1571	348	MobiDBLite	consensus disorder prediction	213	227	-	-
	Gso16g1571	348	Coils	Coil	177	197	-	-
	Gso16g1571	348	MobiDBLite	consensus disorder prediction	281	305	-	-
	Gso16g1571	348	PRINTS	Heat shock factor (HSF) domain signature	33	56	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso16g1571	348	PRINTS	Heat shock factor (HSF) domain signature	71	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso16g1571	348	PRINTS	Heat shock factor (HSF) domain signature	84	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso16g1571	348	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-2A	12	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso16g1571	Gso-Chr16	36240774	36242452	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso16g1571	5	348	HSF	AT5G62020	46.797	1.26e-95	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gso16g1571		HSF_DNA-bind	3.9e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso16g1571	K09419		-	gmx:100812267	631.328

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso16g1571	16	36240774	36242452	Gso9g1182	9	34001674	34003359	GST
	Gso16g1571	16	36240774	36242452	Gso20g1257	20	42661635	42663069	PCT
	Gso16g1571	16	36240774	36242452	Gso10g2120	10	48185142	48186433	PCT
	Gso20g1257	20	42661635	42663069	Gso16g1571	16	36240774	36242452	PCT
	Gso10g2120	10	48185142	48186433	Gso16g1571	16	36240774	36242452	PCT