Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1559 ATGCTTGAATTTAATGCATTCCACTTTCACCTCACTCACATCATTTTCTCCCTCATTTTCAACCTTTCTAAAGCACAATCCTCCATGGAGCCAGTTCCCGCCTACATCACCCACCACAGCTGGGAGCCTTCCGTCGCCATCACCGTCGCCGCCATCATCTTCGCCCTCCTCCTCATGGCTATCATCTCAGTCTACCTCCGCCGTTGCGCCCAGTCTCACATCATCATCACCACCACCACCTTACCCTGCTCCTGCTCCCAGGGGATCAACAAGGACCTCCTCAACACGTTCCCAACGCTCTTTTACTCCAACATCAAGGACCTCAATAAGGCCAACCAAACGCTCGAATGCGCCGTCTGTCTAACGGATTTCACTCACAAAGACTCGCTTAGGCTGCTGCCCAAATGCAATCACGTGTTCCACCCTCATTGCATTGATTCCTGGCTGACATCTCACGTGACATGTCCCGTTTGTCGCGCGAATCTCAGCCAGGAATCATCATGCCATGTTTCCATAACCGTCCCTCCTCATGGCGAGGAGGGAAGTTTGGGAAACATGACGACAACAACAACAGAAGCCACCCAAGTTGAGCAAAGGCCAAGCAATGACATCAATCAGGATTGTGTTGGAGATCCCACATCGACTAGTGATACTACCAAAATAATATATATAAGCGAGGAACAACATTCATCTAGTGAGCTAGCTTGTGAGGTTGAGTTAGGTTCAAATACGAATGTTAGAAATTCTACTATCACTAATATTGGTGATGGGGTTGTTGCGTTGGAGAGAAACCTTTCAAGGTCGAACTCGACGGGGCATTCCCTTGTGGAGGAGCAAGGGAAGGGTGTGGAGAGGTACACGTTGAGGTTGCCCGAAGATGTGAGGAGGTACATTCTAGTGAACCATGGAAGAAGTGTTCAACGTTCCGCGAGTGTTAAAGGGGGGTGTTGGAGTGACAGCGAAGAGAGTTACGTGGGGAAGAGGGTGGAGAAGAGGTGGGTGATCTGCACGCCGCCATTTGTGGCGCAACATGATTGA 1038 0.5 MLEFNAFHFHLTHIIFSLIFNLSKAQSSMEPVPAYITHHSWEPSVAITVAAIIFALLLMAIISVYLRRCAQSHIIITTTTLPCSCSQGINKDLLNTFPTLFYSNIKDLNKANQTLECAVCLTDFTHKDSLRLLPKCNHVFHPHCIDSWLTSHVTCPVCRANLSQESSCHVSITVPPHGEEGSLGNMTTTTTEATQVEQRPSNDINQDCVGDPTSTSDTTKIIYISEEQHSSSELACEVELGSNTNVRNSTITNIGDGVVALERNLSRSNSTGHSLVEEQGKGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGGCWSDSEESYVGKRVEKRWVICTPPFVAQHD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1559 345 PANTHER RING FINGER DOMAIN-CONTAINING 1 321 - -
Gso16g1559 345 Pfam Ring finger domain 116 159 IPR001841 -
Gso16g1559 345 SUPERFAMILY RING/U-box 96 164 - -
Gso16g1559 345 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Gso16g1559 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 166 IPR013083 -
Gso16g1559 345 CDD RING-H2_EL5_like 116 159 - -
Gso16g1559 345 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 321 - -
Gso16g1559 345 SMART ring_2 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1559 Gso-Chr16 36153060 36154596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1559 14 299 Rapid Response to Elicitors AT3G05200 33.775 1.85e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1559 K10664 - gmx:100809056 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1559 16 36153060 36154596 Gso9g1163 9 33290378 33292161 GST