Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1555 ATGGGCGTGAAGAATCTGTGGGACGTCCTCGAATCGTGCAAGAAAACGGTTCCCCTTCACCACCTACAGAACAAGAGGGTGTGCGTGGACCTGTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCGCACGCCTGCGTCAAGGAGAAAGTCTATCTCAGAGGACTCTTTCACCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAGATGGAGCTATTCCTGCCATCAAATTATCAACCTATAGGCGTCGCTTAAATGTTGGAAAGGAGGTACAGGTAGCACAAAATGAAACTAACTTACAGAAAGCGACTTCATTACAGAGAAACATGGGGTCTGAGTTTTCTTGCATGATCAAAGAGGCTAAGGTCTTGGGGATGGCTCTTGGCATTTCTTGTTTAAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAATCATTATGCGATGGGTGTTTCAGTTCAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTATATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGACAGATATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGAGACAAATATATTCTTAAGAAATTTGCTTCTGAAGGACTTGGATGGGTCAAAAAAAGAAAAGGAGGTAAGAATGATTTATGGCCGGATGATAACATTTTACAAGTAATTAATGCTTATATGAAGCCAAAATGTCACCAAGCAGATTCAGATATTGTGCACAAGGCTCTTGCTCAATATCCATTTCAACGTACTAAACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTACGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATATTCAGAAAAGAAAACCAAAGAAAAAGGAAACTAATTCATCTGTGGCAGAGCTTGATCTAAAACTTCAGAATTTGTTGCTTGATATTAATTTGAGAGACGAAGCCAACTTCAATGCCTCTGATTCTTCAGGAAGGATATCAAGAATTACAACTGATATGGCTGAAGCTGATCTGAATACCACAGACTTGTTGCCCCTATCACATGACATAGAACACACTGGGTTAATTCAGAATTCTAGCAGTGAGGTGGTTTCCAGTATAGATAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAGAAATCCAATTTATCCTCAAAATGTCAGCAATCAAGTGACCAACATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCCGTTGAACACAAGCAGAAAGCGAAGGAGCTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1713 0.4075 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFHRLRALIALNCSLIFVSDGAIPAIKLSTYRRRLNVGKEVQVAQNETNLQKATSLQRNMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKYILKKFASEGLGWVKKRKGGKNDLWPDDNILQVINAYMKPKCHQADSDIVHKALAQYPFQRTKLQQICVGFFEWPSEKTDGYILPNIAERNLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLETSIVPADLIESACREKILEFEERKAQRKKQNIQKRKPKKKETNSSVAELDLKLQNLLLDINLRDEANFNASDSSGRISRITTDMAEADLNTTDLLPLSHDIEHTGLIQNSSSEVVSSIDKNEIIDLLSPSPPKKSNLSSKCQQSSDQHIEVINLSDSENDMSVEHKQKAKELRLFLASIRNEIH* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1555 570 SUPERFAMILY Chromo domain-like 359 414 IPR016197 -
Gso16g1555 570 CDD PIN_GEN1 2 200 - -
Gso16g1555 570 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Gso16g1555 570 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Gso16g1555 570 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 131 148 IPR006084 -
Gso16g1555 570 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 152 172 IPR006084 -
Gso16g1555 570 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 222 IPR006084 -
Gso16g1555 570 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 202 338 IPR036279 -
Gso16g1555 570 Gene3D - 357 425 - -
Gso16g1555 570 Gene3D - 2 201 - -
Gso16g1555 570 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Gso16g1555 570 Pfam XPG I-region 135 217 IPR006086 GO:0004518
Gso16g1555 570 ProSiteProfiles Chromo and chromo shadow domain profile. 358 418 IPR000953 -
Gso16g1555 570 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 469 - -
Gso16g1555 570 SMART xpgn3 1 97 IPR006085 GO:0004518
Gso16g1555 570 SMART xpgineu 132 202 IPR006086 GO:0004518
Gso16g1555 570 CDD CD_CSD 360 408 - -
Gso16g1555 570 Gene3D - 203 258 - -
Gso16g1555 570 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 469 IPR006084 -
Gso16g1555 570 SUPERFAMILY PIN domain-like 2 217 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1555 Gso-Chr16 36108707 36115878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1555 1 238 Core DNA Replication Machinery Family AT5G26680 24.314 2.91e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1555 K15338 - gmx:100806919 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1555 16 36108707 36115878 Gso16g1555 16 36108707 36115878 ECH