Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1527 ATGGAGAGCCAGCCACTAGAAAAAGCAAAACCAAAATACAGAAAAGGCTTATGGTCACCTGAAGAAGATAATAAACTCAGAAACCATATCATTAAGCATGGTCATGGCTGCTGGAGCTCTGTCCCTATTAAGGCAGGCTTGCAAAGAAATGGGAAGAGCTGTAGACTAAGGTGGATTAACTACTTGAGGCCAGGATTGAAGAGAGGGGTGTTCAGCAAACATGAGGAAGATACAATCATGGTCCTACACCATATGTTAGGAAACAAGTGGTCTCAAATAGCACAGCATTTGCCAGGAAGGACTGACAATGAGATAAAAAATTATTGGCATTCATATTTGAAAAAGAAAGAGATCAAAGCCAAGGAAATGGAATCTGATAAAGAAATTCAGCATGCTAGCTCAAGTTCAGACACAATGGAAAACCCACTCTCTCCTCAGAAACTTGCAACACAAGATCCAAGTTATAGTTTGTTAGAAAACCTGGACAAATCAATAGCACACAATGATAACTTTTTCTCACAAAGCTATAACTTTTCCAAGGAGGCTTGTCAGAGTTCCCTACCATTACCAAAACTCCTATTTTCTGAGTGGCTTTCAGTGGATCAAGTAGATGGTGGAAGCTCAGTGAATTCTGATGATTCCTTGGTCTTGGGGAATGAATTTGATCAAAATTCAACTTTCCAAGAAGCTATAATGCATATGTTAGAAGAAAACTTTGGTGAAGAGTATCATAATAGTCTAATTCACAGTTCAACCACTGAGGTCTACAATTCACAACTAAAGTCAACAAATCAAGTGGATGGAAGTGACTTCATCAATTGTATTCCCGGGAATGAGTTGTGTAGCAATTTCAGCCTAACCAATCATGCTATGTAA 876 0.3881 MESQPLEKAKPKYRKGLWSPEEDNKLRNHIIKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTIMVLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKEIKAKEMESDKEIQHASSSSDTMENPLSPQKLATQDPSYSLLENLDKSIAHNDNFFSQSYNFSKEACQSSLPLPKLLFSEWLSVDQVDGGSSVNSDDSLVLGNEFDQNSTFQEAIMHMLEENFGEEYHNSLIHSSTTEVYNSQLKSTNQVDGSDFINCIPGNELCSNFSLTNHAM* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1527 291 CDD SANT 71 113 IPR001005 -
Gso16g1527 291 CDD SANT 18 62 IPR001005 -
Gso16g1527 291 Gene3D - 70 133 - -
Gso16g1527 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso16g1527 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso16g1527 291 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Gso16g1527 291 MobiDBLite consensus disorder prediction 134 149 - -
Gso16g1527 291 MobiDBLite consensus disorder prediction 123 149 - -
Gso16g1527 291 SMART sant 67 115 IPR001005 -
Gso16g1527 291 SMART sant 14 64 IPR001005 -
Gso16g1527 291 PANTHER MYB DOMAIN PROTEIN 55 1 287 - -
Gso16g1527 291 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso16g1527 291 PANTHER MYB TRANSCRIPTION FACTOR 1 287 - -
Gso16g1527 291 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso16g1527 291 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gso16g1527 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gso16g1527 291 Gene3D - 15 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1527 Gso-Chr16 35610140 35612778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1527 7 199 MYB Transcription Factor Family AT5G52260 54.040 3.11e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g1527 Myb_DNA-binding 6.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1527 K09422 - gmx:100803537 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1527 16 35610140 35612778 Gso9g1146 9 32813955 32816692 GST