Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1503 ATGTCAGAATCCAAGGAAGAAAATCCTGACCTTCTTCTCAAGTCAAAGGCACAGGAGGAACATGGGTTTGTCATGGATTTTGGCATTGGCCTGGAAATTCTGTGGCCCTTGGATCATATATCTTTGGTCTCTAACCCCATGCCTCCTTTTCTCTTTTCCACTATCTCTGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGCTGAAGATGAGAGGCAAATCAGGATTGCAGCTTCAGGTAATACAAATACAACAACTGAAAATCCAATTGAAAATGATGACAACAAAAAAACTGTGCCACCCCTTGTAGCCATGACAGCTTCAGAAAATCCAGATGGTTATTGTCTGATCAAGGAAAGAATGACACAAGCGCTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAATCGGTATGCACTTACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGCTTCCCTGATGTATATGTTCTCTGTGGATGGAGAGAATGATGAGATCCTGGGACTTCCCGGCCGAGTTTTTCAGCATAAAATTCCAGAATGGACTCCCAATGTTCAGTTTTATTCTAGTAAAGAGTATCAGCGCCTAAATCACGCTCAACATTACAATGTCCGCGGAACCTTGGCCCTGCCTGTGTTTGAGCTTGCAGGACAGTCATGTGTGGCTGTAGTGGAGCTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAAGTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAATCAGATTTGTAATGAATACCGTCAGTACGCATTAGCCGAGATTTTGGAGATACTGACAGCTGTGTGTGAAACTCATAGTTTGCCTCTGGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGCGGTCTTAAGAAAATTTGCTCAAGTTTTAATGGTTGTTGCATGGGGCAAGTTTGCATGTCTATAACTGAGGTAGCATTCTATGTAATAGATGCTCATAAATGGGGTTTCCATGAGGCCTGTGTTGAGCATCACCTACAACAAGGTCAAGGAGTTGCTGGGAGGGCATTTTTGTCCCACAACATGTGCTTCTGTGGAAACAATACCCAGTTCTGCAAAACCGAATATCCCTTAGTACATTATGCTCTCATGTTTCATTTAAACAGCTGTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGATTATGTACTAGAGTTTTTTCTGCCTCCTGGGATCACTGACTTTAATGAACAAAAAAGATTGCTGGGATCCATATTGGCAACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGGGAATGCTTCAATTGAAATTATAGACGCAAGAAATGAAAGAGTTCATTTGAGATTTGAGTCCATTCCAATTACACAATCTTCTAAGTCACCACCTAGACATACCTCACCAAATATGGGGGAGGGGCTGCCACTGGAGCCATCAGAACCGAAAATAATGGCATACTTTGATGGTATAAATGATGGAGGGAGTCTTGGTGATAATGCAGGCGGACACATTGATCAGAACACTTCCTTAGAGATCAAAACCAAAAAGAAACCCTCAGATAGAAAACGTGGAAAAGCTGAGATATCAATTAGTCTTAATGTTTTGCAACATTACTTCACAGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATAAAAAAGGTTAACCATTCCCTGTCCAAGCTCAAGTGTGTTATTGAATCGGTCCATGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTAAGTACTGGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGACCCTTTCACTTCAAACAAGTTCCACCGCCAAACCACCTTGACCATTAGGCCATCAGAACCTAAGATCAACGAAAATGATTTTGATGCTTCTGGAGCATCAGAAACAAAAAGACAGGTTGCGATGGAAGATCAATTCCTTGGACTTGAAGCAAGGACACGAAGTCCTGAGAAAGTGATTAATGATAAAGGAGTGTCCATTCAGGAGATTGGCACTAAAGGCACAAACAAGTTTAGAACTGGGAGTGGCTCAAGTGGCAGTGGAAATCCTACTCATGCTTCATGCCATGGTAGTCCCCCAAATGAATTCTCACCTCCAAAAGATACATTTGTAACAGGCAACAGTGAGCAATGTCTTGTGTTAAGAGGATCACTGGGGTCAACAACACTGCACTCAACTAGTACACCAAACCGTGCAACTGCATACCCTATGCTTCACATTGTGGAAACAACAGAACCTCAAGAACCATTTGGAGGACAGCTACTTGAGGTTGCTGGTAGTTCTAAAGACTTGAGAAATCTATGCCCTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGAAGCTTACAAGATGAATCCTCAATGTTCTGATTTGCCTCAAATGCAACACATGGATACCCTTAATAAAACTATGACACCTTTTGCAGTTAGAAAAGAGGTGAACAGTGTGACCATTAAGGCAACATATAAAGAAGATATCATCAGGTTTAAGATCTCTATGGACTGTGGTATTGTGGAATTGAAAGAGGAAATTGCCAAAAGATTGAAACTAGAGGTGGGAACATTTCATAACAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTACAGGAGTGCATAGACATCTCAAGATCATCAGGCGGCAACATAATCAGGCTTGTGGTGCATGATATACTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAAGAGATTGGAAAGGTTGTATATAG 2964 0.4224 MSESKEENPDLLLKSKAQEEHGFVMDFGIGLEILWPLDHISLVSNPMPPFLFSTISEQPFSPVWAFSDAEDERQIRIAASGNTNTTTENPIENDDNKKTVPPLVAMTASENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTASLMYMFSVDGENDEILGLPGRVFQHKIPEWTPNVQFYSSKEYQRLNHAQHYNVRGTLALPVFELAGQSCVAVVELIMTSQKINYAPEVDKICKALETVKLRSSEILEHPYNQICNEYRQYALAEILEILTAVCETHSLPLAQTWVPCKHRSVLAHGGGLKKICSSFNGCCMGQVCMSITEVAFYVIDAHKWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNNTQFCKTEYPLVHYALMFHLNSCFAVCLQSSHTGNDDYVLEFFLPPGITDFNEQKRLLGSILATMKPHFQSLKIASGVELEGNASIEIIDARNERVHLRFESIPITQSSKSPPRHTSPNMGEGLPLEPSEPKIMAYFDGINDGGSLGDNAGGHIDQNTSLEIKTKKKPSDRKRGKAEISISLNVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNHSLSKLKCVIESVHGAEGAFGLNSLSTGSLPIAAGSFSDPFTSNKFHRQTTLTIRPSEPKINENDFDASGASETKRQVAMEDQFLGLEARTRSPEKVINDKGVSIQEIGTKGTNKFRTGSGSSGSGNPTHASCHGSPPNEFSPPKDTFVTGNSEQCLVLRGSLGSTTLHSTSTPNRATAYPMLHIVETTEPQEPFGGQLLEVAGSSKDLRNLCPSADAVLEDQVPEAYKMNPQCSDLPQMQHMDTLNKTMTPFAVRKEVNSVTIKATYKEDIIRFKISMDCGIVELKEEIAKRLKLEVGTFHNKYLDDDHEWVLIACDADLQECIDISRSSGGNIIRLVVHDILPILGSSCESSRDWKGCI* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1503 987 MobiDBLite consensus disorder prediction 501 526 - -
Gso16g1503 987 Pfam PB1 domain 888 968 IPR000270 GO:0005515
Gso16g1503 987 PANTHER PROTEIN NLP8 3 982 IPR045012 GO:0003700
Gso16g1503 987 SUPERFAMILY CAD & PB1 domains 886 972 - -
Gso16g1503 987 Gene3D - 884 968 - -
Gso16g1503 987 SMART PB1_new 887 969 IPR000270 GO:0005515
Gso16g1503 987 CDD PB1_NLP 888 968 IPR034891 -
Gso16g1503 987 MobiDBLite consensus disorder prediction 734 762 - -
Gso16g1503 987 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 982 - -
Gso16g1503 987 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Gso16g1503 987 Pfam RWP-RK domain 578 625 IPR003035 -
Gso16g1503 987 MobiDBLite consensus disorder prediction 734 775 - -
Gso16g1503 987 ProSiteProfiles PB1 domain profile. 887 969 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1503 Gso-Chr16 35265669 35270338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1503 252 980 NLP Transcription Factor Family AT4G24020 50.135 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso16g1503 PB1 6.1e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1503 - - gmx:100797708 1972.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1503 16 35265669 35270338 Gso9g1122 9 32221347 32225994 GST
Gso16g1503 16 35265669 35270338 Gso20g1286 20 42923530 42928731 PCT
Gso16g1503 16 35265669 35270338 Gso10g2091 10 47861047 47865877 PCT
Gso20g1286 20 42923530 42928731 Gso16g1503 16 35265669 35270338 PCT
Gso10g2091 10 47861047 47865877 Gso16g1503 16 35265669 35270338 PCT