Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1497 ATGCCAATTGCAAAACTCAAAGCCTCTGGCACTCCAGATGTGATGAAAACCGAAGACAGAATAGATACCTTAATCAGACAGGCAATTGGCAAAGAACCTTTCATTCCTTTTCCAAGGGCCAGTGAAAGCCCTGTACAGTGGATTCAATTACTCCATGCTTTAGATCCGCAAGGTGTCAGCAATACTTTTTCAGAATTTCCTGGGTGGCCTTTGTTCTCTCCTCTGAAGGTTCAGTTGCAGAAGTGTGACAAATGTTCTCGAGAGTTTTGCTCCCCCGTTAACTATAGAAGACATATACGTGTACATCATCGGTTGAAAAAGCTTGATAAGGATTTTACAAAAACTAAGGATCTTTTAGGAGCATATTGGGATAAGCTCTCCGTAGAAGAGGCAAAGGAAGTTGTATCATTCGAAAATGTGCTGCTGGAGGAAGTTCCAGCTTCTTCAATTTTAAAATCTCTGACAACTTTTATTCAAAACCAAGGATTTTATTCTTTTCCTCAGTATTATCTGATGGCTGGTGCTGCCCTTTTGGATATTGTTCAATCTAAACCTTCCTGCTTTCCTATATCTTCCCAGGAGTTGTTCAGCATCCTTGATGATGCTAGTGAAAATACTTGTTTATGTGGGACAGCAGAATCAATGCAAAGATATGTATTTGATGGAGAGGCTGGAAAAATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAACAGAAATTGGTGAAGGCATGGCTTGCGGACAAGGATGCTGAAGCACTAAGGTGCCAAAAGCAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAGAAGCTTAGACAAAAAGAGCAGAAAGCTAGGGAACAAAGACACCAAGCTGAGGCAGAAATTAAAGGCGATATTGACAGTACTGTAAAGGCTTTATCACCGGCAGAAGCATCTTTAGATACATACAATTTTGAAGCTCATAATCCAAGTACATTTTCAGATAACGCAGCTTCACCTGTACCTTTCCAATGTCCTGACACCAGTGAAGAAATAAATGGGGATATTCATTCAGAGTCTGAAACTATCACTGATCAGGATATTGTGAGACAGTCAGCACATGGACATAAACATAAGCGCCAAGCAGTTGCCAGACAACAGGGGCTGCCAAAATTACAATGGGCTGTAGCCAATGGTTTGCATACAAAGCAGAATTCTCCAGTGTCAAAACTTGAAATCAATCAGAAATATGGAACCCACTGTGATCAAAAGGCATCTTCTATAGTTAATGGTAGCAAAGTATGGACTCGGAAGTCTAAAACCGAAATTGACAAGGTGGTTTTAAAAACCATAAAAGAGAAGGAACCAGACCAAGTTAAGAATCAAGAAGTCTTAATAGGATCTATATCTGTTAATCTTAGCAATTGCAGCCAATCAGAGGGTAATATGGTGGCTTCTCAAAAGGACTTCATTGTTGAGAATATGGGAAAGCAGAATATTTCTCGGGATAAGCCAATGAAAACTGATCTTGCCATGGGTGACAACAATCGCTCAACAGTCAAGTTTTGGAGGCCAGTTAGCCGGCTTGAAACTAAAGATCCACTTCCAGTTCAAAGTGGCGGGACAAAAGTTGATGCAGTTCATGAAAATGGTCAAAACTTGTCAGGTCCAAGTTCTTTAAGGGTGTGTACTGCTGCCGGTGGTGATATTGGTTTTGCTAAGTATTTCTCCCATACAGAGGATAAAGCAGATCCAGGAAGCTTCTGGTTCGACATCCAGGCTGCAAAAGCTTTCCTTGCACAAAGGTGGAAGGAAGCTATCTCATCAGAACATGTGACATTGGTTATTTGCCCCGACTCGGAACCTCCTGGGTGCGAGGAGATACAGGATTTGAAAACAGCAGCATGTCAATCTTCTGATATGGATGGATGTGACATTGTGGCAAATGCAGATAAAAGATTGCCTGCAACCTCCAAAGTTGCGAAATCCAAACCCAGGTTGAAGAAGTCTGAAAAGGGAACCAAGATAAAGTATATTCCGAAACAGAAGACAAATACCTAG 2073 0.4139 MPIAKLKASGTPDVMKTEDRIDTLIRQAIGKEPFIPFPRASESPVQWIQLLHALDPQGVSNTFSEFPGWPLFSPLKVQLQKCDKCSREFCSPVNYRRHIRVHHRLKKLDKDFTKTKDLLGAYWDKLSVEEAKEVVSFENVLLEEVPASSILKSLTTFIQNQGFYSFPQYYLMAGAALLDIVQSKPSCFPISSQELFSILDDASENTCLCGTAESMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKAREQRHQAEAEIKGDIDSTVKALSPAEASLDTYNFEAHNPSTFSDNAASPVPFQCPDTSEEINGDIHSESETITDQDIVRQSAHGHKHKRQAVARQQGLPKLQWAVANGLHTKQNSPVSKLEINQKYGTHCDQKASSIVNGSKVWTRKSKTEIDKVVLKTIKEKEPDQVKNQEVLIGSISVNLSNCSQSEGNMVASQKDFIVENMGKQNISRDKPMKTDLAMGDNNRSTVKFWRPVSRLETKDPLPVQSGGTKVDAVHENGQNLSGPSSLRVCTAAGGDIGFAKYFSHTEDKADPGSFWFDIQAAKAFLAQRWKEAISSEHVTLVICPDSEPPGCEEIQDLKTAACQSSDMDGCDIVANADKRLPATSKVAKSKPRLKKSEKGTKIKYIPKQKTNT* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1497 690 Coils Coil 256 305 - -
Gso16g1497 690 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
Gso16g1497 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Gso16g1497 690 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 689 - -
Gso16g1497 690 MobiDBLite consensus disorder prediction 661 690 - -
Gso16g1497 690 SMART c2h2final6 80 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1497 Gso-Chr16 35198587 35207609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1497 19 687 C2H2 Transcription Factor Family AT4G25610 40.441 4.82e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso16g1497 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1497 - - gmx:100809067 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1497 16 35198587 35207609 Gso9g1116 9 32137619 32140787 GST
Gso16g1497 16 35198587 35207609 Gso20g1292 20 42969564 42975163 PCT
Gso16g1497 16 35198587 35207609 Gso10g2085 10 47812595 47818112 PCT
Gso20g1292 20 42969564 42975163 Gso16g1497 16 35198587 35207609 PCT
Gso10g2085 10 47812595 47818112 Gso16g1497 16 35198587 35207609 PCT