Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1490 ATGCCTTCATGGTGGGGAAAATCATCATCAACCAAGAAGAAAGCAAATAAGGAAAGTTTTATTGATGCATTTCACCGAAAATTTAAAATCCCATCCGAAGGTAAACCAAGCGGTAGATCTGGAGGATCTCGTAGACATTGCGATGATTCAATTTCAGAGAAAGGGGCTCAGTCTCCTCCTGAATCAAGATCTCCTTCTCCTTCCAAGGTGGGAAGGTGTCAAAGCTTTGTTGAAAGGCCTCATGCTCAGCCACTACCACTTCCTGGCTTGCACCCATCAAATATAAGCCGAGCAGATTCCGAAATTAGTATACCATCATCTAGAAGAAGACATGGAAAGGGCTCCAAATCATCGTTGTTTCTTCCACTACCAAAACCAGCGTGCATGCGTGGTAGGTTGAACCCTGCTGAGTTGGATGGAGATTTGGTCACGGCTTCAGTCTCTAGTGAGAGCTCTGCTGATAGTGATGAACCAGTGGACTCTCACAATCGTAGTCCTCTGGCAACTGACTGTGAAACTGGGACTAGAACTGCTGCAGGCAGTCCCTCCAGCTTGATGCAGAAGGATCAATCATCTACTGTTTCCCAAATAAACTCAAGGGAAGCCAAAAAACCGGCAAATATTCTGGGTAATCATATGTCTTCTACTTCACCAAAACGTAGGCCCTTAAGCAACCATGTTACAAATCTGCAGATTCCTCCTCATGGTGCCTTCTTCAGTGCGCCTGACAGTTCAAGATCAAGTCCATCAAGAAGTCCATTGAGAGCATTTGGTACCGAACAGGTGTTGAACTCTGCTTTTTGGGCCGGGAAGCCATATCCAGAGGTCAATTTTGGTGGATCTGGCCACTGCTCAAGTCCTGGTTCTGGTCACAATTCTGGGCATAATTCAATGGGAGGGGACATGTCAGGACAGTTATTTTGGCAACCTAGCAGGGGTAGCCCAGAATATTCCCCCGTACCTAGTCCCAGAATGACTAGCCCTGGTCCAAGCTCTAGAATTCAGAGTGGAGCTGTTACACCTATTCATCCAAGAGCTGGGGGAACACCCAATGAATCACAGACAGGAAGGATTGATGATGTAAAACCACAGAGTCATCGTTTGCCCCTTCCTCCCTTAGCAGTTACAAATACTTTGCCTTTCTCTCATTCAAATTCTGCAGCAACTTCTCCATCTATGCCAAGAAGTCCAGGAAGAGCAGATAATCCAATTAGCCCTGGATCACGTTGGAAAAAAGGAAAGCTGCTTGGCAGAGGCACATTTGGACATGTCTATGTTGGCTTTAATAAGGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTAACTCTTTTTTCAGATGATGCCAAATCTAAAGAGAGTGCTAAGCAATTAATGCAGGAAATTACCTTGTTGAGCCGGTTACGACATCCAAATATTGTGCAGTATTATGGTTCTGAAACAGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGGGACATCAAAGGAGCAAATATACTGGTAGATACTAATGGCCGGGTTAAGTTGGCAGACTTTGGCATGGCAAAGCATATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGGTTATAAAAAACTCTAATGGTTGCAACCTAGCTGTTGATATATGGAGCCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCCATGTTTAAGATTGGTAATAGCAAGGAACTCCCAACAATCCCAGATCATCTCTCCAGTGAAGGAAAGGATTTTGTTAGGAAATGCCTACAACGTAATCCACACAATCGCCCTTCAGCCAGTGAATTATTGGACCACCCTTTTGTAAAATGTGCTGCACCTTTAGAAAGACCTATTCTGGGTCCTGAGTCTCCTTCAGACCCAGCACCAGCAGTATCGGGGATCACACAAGGAGCGACAGCTTCGGGCATTGGGCAAGGAAGGAATCCGTCCAAGTTGGATTCAGATCGACTTTCTCTTCATTCTTCTAGGTTTTTGAAAACTAATCCCCATGCAAGTGAAATCCATATTCCAAGGAATATATCTTGCCCTGTTTCACCCATTGGAAGCCCACTTTTGAGGCCAAGATCACCACAACACATGAATGGGCGAATGTCTCCCTCTCCTATATCTAGCCCTCGGACTGCTTCTGGTGCATCCACGCCTCTTAATGGTGGTAGCGGTGCCATTCCATTTAGTAATCACTTAGTTTACATTCAAGAGGGTCTTGGAAACTTGCCAAAATCTTCAAATGGTGTCTACGTTAGTGGCCCTGCTCATCATGACTTGAATGTTGACATTTTTCGAGGAATGCAACAGACATCTCACATTACATCAGAACTGGTTCCAAGTGAAAGTGATGTTCTGGGGAAGCAGTTTGCACGGACTCCTCATAATGAGCCGTATGATGTTCAATCAGTCTTGGCTGACCGTGTTTGCCGGCAGCTGCTGGGGGATAATGTGAAAATTAACCAATGCCTTGATCTAAGTCCCAACTCTTTGCTCAGCCGGGCTAATGGTTTATGA 2697 0.4453 MPSWWGKSSSTKKKANKESFIDAFHRKFKIPSEGKPSGRSGGSRRHCDDSISEKGAQSPPESRSPSPSKVGRCQSFVERPHAQPLPLPGLHPSNISRADSEISIPSSRRRHGKGSKSSLFLPLPKPACMRGRLNPAELDGDLVTASVSSESSADSDEPVDSHNRSPLATDCETGTRTAAGSPSSLMQKDQSSTVSQINSREAKKPANILGNHMSSTSPKRRPLSNHVTNLQIPPHGAFFSAPDSSRSSPSRSPLRAFGTEQVLNSAFWAGKPYPEVNFGGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPNESQTGRIDDVKPQSHRLPLPPLAVTNTLPFSHSNSAATSPSMPRSPGRADNPISPGSRWKKGKLLGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDKLYIYLEYVAGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDTNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSSEGKDFVRKCLQRNPHNRPSASELLDHPFVKCAAPLERPILGPESPSDPAPAVSGITQGATASGIGQGRNPSKLDSDRLSLHSSRFLKTNPHASEIHIPRNISCPVSPIGSPLLRPRSPQHMNGRMSPSPISSPRTASGASTPLNGGSGAIPFSNHLVYIQEGLGNLPKSSNGVYVSGPAHHDLNVDIFRGMQQTSHITSELVPSESDVLGKQFARTPHNEPYDVQSVLADRVCRQLLGDNVKINQCLDLSPNSLLSRANGL* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1490 898 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 815 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 24 52 - -
Gso16g1490 898 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Gso16g1490 898 MobiDBLite consensus disorder prediction 55 71 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 677 713 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 687 710 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 758 783 - -
Gso16g1490 898 CDD STKc_MEKK1_plant 409 666 - -
Gso16g1490 898 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1490 898 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 815 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 284 312 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 24 254 - -
Gso16g1490 898 Gene3D Transferase(Phosphotransferase) domain 1 408 676 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 209 231 - -
Gso16g1490 898 MobiDBLite consensus disorder prediction 166 202 - -
Gso16g1490 898 SUPERFAMILY Protein kinase-like (PK-like) 408 750 IPR011009 -
Gso16g1490 898 MobiDBLite consensus disorder prediction 743 783 - -
Gso16g1490 898 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1490 898 MobiDBLite consensus disorder prediction 377 396 - -
Gso16g1490 898 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1490 898 MobiDBLite consensus disorder prediction 284 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1490 Gso-Chr16 35124786 35132517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1490 4 888 MAP Kinase Kinase Kinase AT1G63700 59.730 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso16g1490 Pkinase 2.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1490 K20717 - gmx:100792783 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1490 16 35124786 35132517 Gso9g1108 9 31979501 31987316 GST
Gso20g1297 20 42999282 43007265 Gso16g1490 16 35124786 35132517 PCT
Gso10g2081 10 47777580 47785511 Gso16g1490 16 35124786 35132517 PCT