Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1480 ATGTCCTCGTCGGGGTTCCCTGGCGGCGGTGGTGCGTCGGAGTTTTTCGCCGGGGTAGGTGGTTTCGGCGGCAGATCCATTCCGGCGGCCAGCATGAACAACCCCAACGCCGCCGCCTCCGCCACCAACAACAACCTCCACCCTCTCTACCGAACCCAACAACAACAACAACAACAACAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTTCCTCGCAGATCGCCCAACGGCAAACACCAACCCTAATCGGTAAACGTACCCTAACCGAATTCCAAGCCTACAACCAAACCAACAACAACCCAAACCACGTCCTCTCCAACCTCCTGCTTCGTACCGTTAAGCCCCGAACCACTTTCTCCCATAACCATATGGACTTTCCCGTTCCTGAATTGCAAAGCCAAAACCTTTATGCCAACCAAACGCAGCGTTTTGGTGTTCCGTTACTTCACCAGCTCCGCCCTCAGCCCATTAATCTCCCCAACAACGGGCCCGTGCCCATGACAGGCCCAAATTTCGGCTACCGGAACTCGAATTTGGGTTTTCCACCAAACCAGAACCGGGTTCGTGTTTCTCCTCCTGTTTCTGTTCCGGTTCAGGTTCAGTCATCTGAACCGGAAAAGAAGATCATGGACCACAGGCTTCTTGAATTGGAGAAGCAGCTTCTGGAAGATAACGACGAAGAAGGAGAAGCAGATGCTGCGTCTGTGATAACCACGAGCGAGTGGTCCGAGACTTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACCGGTTTTGACGACCACGTCGCCCACTTCGTCGACGACGTCATCCACGTCATCTTCTTCCTCCGTGGCTTCGCCTGCTTCCGGATGCTCCAAGCAAACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAACATGATGTTGCAGCGGAGATCCTCAACCGGTTGAACGGTGTGAACCGGAGTGATAGGTTAACGGATTGCATGGTTTCGGCGTTGAAATCGAGGATGAATCCGGGGGAGCATCCTCCGCCGGTGGCGGAGCTTTTCAGAAAGGAGCACGCCGAGTCGTCTCAGCTGCTTTTGGATAACTCAGTGTGCTTCAAGGTAGGGTTCATGGCGGCGAATTACGCGATTCTGGAAGCCGCATTTGAGGAGAAAACGGAGAATAACAGGTTCTGCGTGGTGGATTTTGAGATTGGAAAGGGAAAGCAGTATTTGCACCTCCTCAACGCGCTCTCGGCGCGTGACCAGAACGCGGTGGTGAAGATCGCGGCTGTGGCGGAGAACGGCGGCGAGGAGAGAGTGCGCGCCGTGGGAGACATGCTGAGTCTACTCGCGGAGAAGCTGAGGATCAGGTTCGAGTTCAAGATCGTCGCGACCCAGAAAATCACCGAGTTGACTCGCGAGTCGCTGGGATGCGAAGCGGACGAGGTTCTCATGGTGAACTTCGCGTTCAACCTGAACAAGATTCCCGACGAGAGCGTCTCCACGGAGAATCCTCGGGACGAGCTCCTGCGTCGCGTGAAGCGTCTGGCGCCGCGCGTGGTGACAATTGTGGAGCAGGAGATAAACGCGAACACGGCGCCGTTTTTGGCGCGCGTGGCGGAGACGCTGTCGTATTACGGCGCGTTGTTGGAGTCCATTGAGGCCACCACTGCAGGGAGAGAAAATAACAATAACAACCTAGACCGAGTCAGACTCGAGGAGGGACTGAGTCGAAAATTGCATAACTCGGTGGCGTGCGAAGGAAGAGATCGCGTGGAACGGTGTGAAGTGTTTGGAAAATGGCGCGCGCGTATGAGCATGGCGGGGTTCGAGTTAAAACCACTGAGTCAAAGCATGGCCGAGTCAATAAAATCGCGACTCACCACGGCCAACAACCGAGTCAACTCGGGACTGACTGTAAAAGAAGAGAACGGAGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACGGTCGCATCTGCTTGGCGTTAA 1974 0.5446 MSSSGFPGGGGASEFFAGVGGFGGRSIPAASMNNPNAAASATNNNLHPLYRTQQQQQQQQQQNLPAMFLDPSSQIAQRQTPTLIGKRTLTEFQAYNQTNNNPNHVLSNLLLRTVKPRTTFSHNHMDFPVPELQSQNLYANQTQRFGVPLLHQLRPQPINLPNNGPVPMTGPNFGYRNSNLGFPPNQNRVRVSPPVSVPVQVQSSEPEKKIMDHRLLELEKQLLEDNDEEGEADAASVITTSEWSETYQNLISPGPVQKPVLTTTSPTSSTTSSTSSSSSVASPASGCSKQTLMEAASAIVEGKHDVAAEILNRLNGVNRSDRLTDCMVSALKSRMNPGEHPPPVAELFRKEHAESSQLLLDNSVCFKVGFMAANYAILEAAFEEKTENNRFCVVDFEIGKGKQYLHLLNALSARDQNAVVKIAAVAENGGEERVRAVGDMLSLLAEKLRIRFEFKIVATQKITELTRESLGCEADEVLMVNFAFNLNKIPDESVSTENPRDELLRRVKRLAPRVVTIVEQEINANTAPFLARVAETLSYYGALLESIEATTAGRENNNNNLDRVRLEEGLSRKLHNSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQSMAESIKSRLTTANNRVNSGLTVKEENGGICFGWMGRTLTVASAWR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1480 657 Pfam GRAS domain family 289 657 IPR005202 -
Gso16g1480 657 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 78 656 IPR005202 -
Gso16g1480 657 ProSiteProfiles GRAS family profile. 279 657 IPR005202 -
Gso16g1480 657 MobiDBLite consensus disorder prediction 250 285 - -
Gso16g1480 657 PANTHER SCARECROW-LIKE PROTEIN 8 78 656 IPR030013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1480 Gso-Chr16 34967992 34970388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1480 43 657 GRAS Transcription Factor Family AT5G52510 46.970 4.69e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso16g1480 GRAS 4.5e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1480 - - gmx:100788551 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1480 16 34967992 34970388 Gso9g1098 9 31479514 31481954 GST
Gso16g1480 16 34967992 34970388 Gso20g1302 20 43045622 43047811 PCT
Gso16g1480 16 34967992 34970388 Gso10g2074 10 47710312 47712441 PCT
Gso20g1302 20 43045622 43047811 Gso16g1480 16 34967992 34970388 PCT
Gso10g2074 10 47710312 47712441 Gso16g1480 16 34967992 34970388 PCT