Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1478 ATGGATCCCAATGATGATAGGGGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTCTGCTTAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGAGGCCCAAAACGCGGGGAGCCACGTGGTTTTGCTTTTATCCAGTACAACACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAGATGCATGGGAGGTTAGCTTGCGGCCGGCCATTGTTTGTTCGTCTTGCTGGCGAAAAGTGCATGTTGGAAACAGCTGATAACTCTACAAAAGCAGCTGGTGAAGGGCACAAGATGCATCTCACTGGTGGTGGTGGTGCCATGGGACAAACAAGTCGAAGTGCCAAAATAGCTGCTATAAAAAACAAATTGAAATCCTTAGAGGAGGAGTTCAAGGTCCAAGAAGCAAAAGCGAAGTGA 456 0.4452 MDPNDDRGESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYNTKEEAELAKEKMHGRLACGRPLFVRLAGEKCMLETADNSTKAAGEGHKMHLTGGGGAMGQTSRSAKIAAIKNKLKSLEEEFKVQEAKAK* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1478 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 83 IPR000504 GO:0003723
Gso16g1478 151 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Gso16g1478 151 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 144 - -
Gso16g1478 151 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 144 - -
Gso16g1478 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 91 IPR000504 GO:0003723
Gso16g1478 151 SMART rrm1_1 11 87 IPR000504 GO:0003723
Gso16g1478 151 Gene3D - 8 101 IPR012677 -
Gso16g1478 151 CDD RRM_RBM18 11 89 IPR039157 -
Gso16g1478 151 MobiDBLite consensus disorder prediction 101 122 - -
Gso16g1478 151 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1478 Gso-Chr16 34946744 34950005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1478 10 92 Eukaryotic Initiation Factors Gene Family AT3G16380 34.940 4.78e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1478 K24527 - gmx:100804800 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1478 16 34946744 34950005 Gso16g1478 16 34946744 34950005 ECH
Gso16g1478 16 34946744 34950005 Gso9g1095 9 31408998 31411423 GST