Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1472 ATGGCGGTAGGACTCTCCGCCGCCATAACCATGAAGTCCCTCCTCCGTTTCCACCAACCTCACCTGAACCTCCCCAAATCAATCCCAACAACACTCCCTTTCTCCCCCATGAGAATTTTCCACCACACAGCATCACCAAGAACCCAAAAAGTTTCAACTTTCACCGTTTGTGTCCTCATGCAGGACCCAAAACAAGGCACCCACATGGAAATTGAGCCACAAGAACAACCTCCTCCTCCTCCTCCTCCCGCTCAACAAGTTCTGTCACCAAAGTTGGCTGAGAAATTGGCCAGAAAAGAGTCTGAGAGGTTCACTTACCTCGTTGCTGCTGTCATGTCTAGCTTCGGCATCACATCCATGGCAGTGTTCGCTGTTTATTGCAGATTCTCGTGGCAAATGGAGGGTGGAGAAGTGCCTTGGTCTGAAATGTTTGGCACATTTGCTCTATCAGTGGGAGCTGCTGTGGGTATGGAATTTTGGGCTAGATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAGTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAATAATCAACGCTGTCCCTGCCATCGCTCTCCTTTCCTATGGTTTCTTTAACAAGGGACTGGTCCCTGGCCTTTGCTTTGGTGCGGGTCTTGGAATTACGGTCTTTGGGATGGCCTACATGTTTGTACACGATGGATTGGTTCATAAGAGATTCCCGGTGGGCCCCATTGCAAACGTGCCCTATCTCAGAAGGGTGGCCTCTGCTCACCAACTTCACCATTCGGAAAAATTCAATGGAGTGCCATATGGGCTGTTTTTGGGACCCAAGGAAATTGAAGAGGTGGGAGGGCTAGAAGAGCTGGAGAAAGAGATAAGTAGGAGAGCAAGGTCATACAAAATAGCTAATGAGAACAACTAA 942 0.4958 MAVGLSAAITMKSLLRFHQPHLNLPKSIPTTLPFSPMRIFHHTASPRTQKVSTFTVCVLMQDPKQGTHMEIEPQEQPPPPPPPAQQVLSPKLAEKLARKESERFTYLVAAVMSSFGITSMAVFAVYCRFSWQMEGGEVPWSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRRVASAHQLHHSEKFNGVPYGLFLGPKEIEEVGGLEELEKEISRRARSYKIANENN* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1472 313 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 3 306 IPR045019 GO:0016491
Gso16g1472 313 Pfam Fatty acid hydroxylase 153 280 IPR006694 GO:0005506|GO:0008610|GO:0016491
Gso16g1472 313 Coils Coil 292 312 - -
Gso16g1472 313 MobiDBLite consensus disorder prediction 73 87 - -
Gso16g1472 313 MobiDBLite consensus disorder prediction 69 88 - -
Gso16g1472 313 PANTHER BETA-CAROTENE HYDROXYLASE 3 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1472 Gso-Chr16 34900017 34902708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1472 1 223 Chloroplast and Mitochondria Gene Families AT4G25700 61.062 2.72e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1472 K15746 - gmx:100785541 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1472 16 34900017 34902708 Gso9g1090 9 31266305 31268964 GST
Gso16g1472 16 34900017 34902708 Gso20g1307 20 43087999 43090700 PCT
Gso16g1472 16 34900017 34902708 Gso10g2067 10 47649139 47651411 PCT
Gso20g1307 20 43087999 43090700 Gso16g1472 16 34900017 34902708 PCT
Gso10g2067 10 47649139 47651411 Gso16g1472 16 34900017 34902708 PCT