Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1452 ATGACTCATGAAGATTGGGATCTCTTTGCCATAGTTAGAAGTTGCAAAGCTGCTACCTTTACTGCCACCACAAACACTGAAACCCCACCCACCCCCGCCCCCAACACTACCTCATGCTTGGATTTGAGCCAAGAAAATGGCTCATTCTCTTTTCCCAATCTTGTGCAACCAACAACGAATGGGTTCCAAGAGCTTCAACATCAACAATTGGTAATAAACTTCAACCCCACCAACACCACGAGCACCACTTCTAGCACTAGCACTATCACTAGTGGTCTTGGCATCAATCCCAACTCCACTTTTTCTGAGGTTGCGGGATTCATTGGACAACAGCAAGGTTACCACCACCATCTCCTTCCTGCTCCCACAAATCACACCTCCATTGGAACACCCACCACTACTGGTTTTGACAGATTCCAACACCACCAACAACAGCAACTCCAAAGCCCAGAACAAAACCAACCACCCCTTCAAGCACCCCAAACAAGTCCCATCCTTTCACCAACCACACAACCACAAACACCCAGATCAAGAAAAAGAAAAAGCCATCAGAAGAAAATGGTGTGCCATGTAACAGCAGACAATCTGTCATCAGACTTGTGGGCATGGCGAAAATATGGGCAAAAACCCATCAAAGGCTCTCCATATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGCGTCGCGAGAAAGCAAGTAGAACGAAGCACAACCGAACCCAACACGTTCATCGTGACCTACACCGGCGACCACAAACACGCGAAACCTGTTCAGCGGAACTCCCTCGCGGGAAGCACTAGAACCAAACCATCCACGACCCGTTTATCCGAACCCAATGAATCCGTGACTTGCCCAAAAAGAGAAAACGCGTGTTCTTCAAATTCCGAGCTTTCTCCCATGTTGTCAGTTTCCGACACGCCGAAAAACGAGGAAACGGTCTCGGCCGGTGAACCCGATTGCCCTGACATGGAAATTGAGCCCTCCGAAAACGACGACGACGACGTTTTGATACCCAACACGGGTGCCATGTCCGACGCTGTTCTCTTGGGCTTGACCAATGTTGACCGCGACGGCGTTTCGACGCTTGGAATTGATCAGAAAAACACTTCCGGGTCGTGCCAGTCTTATCCGGAACCCGACCCGTTTTCAAAACCCGGTTTATATTCTTCAGCCCTTGGCCCCGCAAAACTCGCCGACCTTCTTGATGACTGTAATTTGTAA 1227 0.4931 MTHEDWDLFAIVRSCKAATFTATTNTETPPTPAPNTTSCLDLSQENGSFSFPNLVQPTTNGFQELQHQQLVINFNPTNTTSTTSSTSTITSGLGINPNSTFSEVAGFIGQQQGYHHHLLPAPTNHTSIGTPTTTGFDRFQHHQQQQLQSPEQNQPPLQAPQTSPILSPTTQPQTPRSRKRKSHQKKMVCHVTADNLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCVARKQVERSTTEPNTFIVTYTGDHKHAKPVQRNSLAGSTRTKPSTTRLSEPNESVTCPKRENACSSNSELSPMLSVSDTPKNEETVSAGEPDCPDMEIEPSENDDDDVLIPNTGAMSDAVLLGLTNVDRDGVSTLGIDQKNTSGSCQSYPEPDPFSKPGLYSSALGPAKLADLLDDCNL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1452 408 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g1452 408 MobiDBLite consensus disorder prediction 123 175 - -
Gso16g1452 408 SUPERFAMILY WRKY DNA-binding domain 192 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g1452 408 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 4 369 - -
Gso16g1452 408 SMART WRKY_cls 197 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g1452 408 MobiDBLite consensus disorder prediction 120 187 - -
Gso16g1452 408 Gene3D WRKY domain 181 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g1452 408 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 369 IPR044810 GO:0003700
Gso16g1452 408 MobiDBLite consensus disorder prediction 261 313 - -
Gso16g1452 408 MobiDBLite consensus disorder prediction 367 389 - -
Gso16g1452 408 MobiDBLite consensus disorder prediction 254 324 - -
Gso16g1452 408 ProSiteProfiles WRKY domain profile. 192 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1452 Gso-Chr16 34768087 34769942 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1452 176 271 WRKY Transcription Factor Family AT5G52830 79.167 9.02e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso16g1452 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1452 - K13425 gmx:100796829 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1452 16 34768087 34769942 Gso9g1060 9 30694597 30696523 GST
Gso16g1452 16 34768087 34769942 Gso20g1312 20 43136402 43138536 PCT
Gso16g1452 16 34768087 34769942 Gso10g2057 10 47580193 47582123 PCT
Gso20g1312 20 43136402 43138536 Gso16g1452 16 34768087 34769942 PCT
Gso10g2057 10 47580193 47582123 Gso16g1452 16 34768087 34769942 PCT