Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1450 ATGACTCATGAGGATTGGGATCTCTTTGCCTTAGTTAGAAGTTGCAAAGCTGCTACCTTTACTGCCACCACAAACACAGAAACCCCACCCACCACCACCCCCAACACTACCTCTTGCTTGGATTTGAGCCAAGAAAATGGCTCATTATTCTCTTTTCCCAGTCTTGTGCAACCAACAACAAATGGGTTCCAAGAGCTTCAACATCAACAATTAGTAATAAACTTCAACCCCACCAACACCACCAGCACCACTACTAGCACTAGCACTATCACTAGTGATCTTGGCATCAATCCCAACTCCACTTTGTCTGAGGTTGTGGGATTCATTGGACAACAGCAAGGTTACCACCACCATCTCCTTCCTGCTCCCACAAATCACACCTCCATTGGAACACCCACCACTACTGGTTTTGACAGATTCCAACACCACCAACAACAGCAACTCCAAAGCCCAGAACAAAACCAACCACCCCCTCAAGCACCCCAAACAAGTCCCATCCTTTCACCAACCACACAACCGCAAACACCCAGATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGCCATGTAACCGCAGACAACCTGTCATCAGACTTGTGGGCATGGCGAAAATATGGACAAAAACCCATCAAAGGCTCTCCATATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGCGTCGCGAGAAAGCAAGTAGAACGAAGCACCACCGAACCCAACACGTTCATCGTGACCTACACCGGCGACCACAAACACGCGAAACCTGTTCACCGGAACTCCCTCGCGGGAAGCACCAGAACCAAGCCATCCACGACCCGTTTATCCGAACCCAATGAATCCGTGTCTTGCCCAAAAAAAGAAAACGCATGTTCTTCAAATTCCGAGCTTTCTCCAATGTTGTCAGTTTCTGACACGCTGGAAAACGAGGAAACGGTCTCGGCCAGCGAACCCGATTGCCCTGACATGGAAATTGAGCCCTCTGATAACGACGACGTTTTGATACCTAACACGGGTGCCATGTCCGACGCTGTTCTCTTGGGCTTGACCAATGTTGAACGCGACGGCGTTTCGACGTCAGAAAAACACTTCCGGGTCGAGACAGTCTTATCCGGAACCCGACCCGATTTCCAACCCGGTTTAGATTCTTCAGCTCTTCGCCGCACAAAACTCGCCGACCTTCATGATGATTGTAATTTGTAA 1212 0.4876 MTHEDWDLFALVRSCKAATFTATTNTETPPTTTPNTTSCLDLSQENGSLFSFPSLVQPTTNGFQELQHQQLVINFNPTNTTSTTTSTSTITSDLGINPNSTLSEVVGFIGQQQGYHHHLLPAPTNHTSIGTPTTTGFDRFQHHQQQQLQSPEQNQPPPQAPQTSPILSPTTQPQTPRSRKRKSQQKKMVCHVTADNLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCVARKQVERSTTEPNTFIVTYTGDHKHAKPVHRNSLAGSTRTKPSTTRLSEPNESVSCPKKENACSSNSELSPMLSVSDTLENEETVSASEPDCPDMEIEPSDNDDVLIPNTGAMSDAVLLGLTNVERDGVSTSEKHFRVETVLSGTRPDFQPGLDSSALRRTKLADLHDDCNL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1450 403 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g1450 403 ProSiteProfiles WRKY domain profile. 193 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g1450 403 MobiDBLite consensus disorder prediction 255 302 - -
Gso16g1450 403 SMART WRKY_cls 198 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso16g1450 403 Gene3D WRKY domain 181 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g1450 403 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 4 361 - -
Gso16g1450 403 SUPERFAMILY WRKY DNA-binding domain 193 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso16g1450 403 MobiDBLite consensus disorder prediction 264 302 - -
Gso16g1450 403 MobiDBLite consensus disorder prediction 118 190 - -
Gso16g1450 403 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 361 IPR044810 GO:0003700
Gso16g1450 403 MobiDBLite consensus disorder prediction 124 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1450 Gso-Chr16 34732164 34734119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1450 153 320 WRKY Transcription Factor Family AT4G01250 49.419 1.84e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso16g1450 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1450 K13425 - gmx:100794708 731.095