Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1448 ATGGCTTCCGATCTCGAAGCAAAAGCCAAAGAGGCCTTCGTCGAAGACCACTTCGAACTCGCCGTGGACCTTCTTTCTCAGGCCATTCACCTCGAACCCAACAAAGCCGAACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCAACAACTTCACTGAGGCTGTTGCTGATGCTAACAAAGCAATTGAATTGAATTCTTCTCTACCAAAAGCATATTTGCGGAAAGGTACTGCGTGCATGAAGCTTGAGGAATATGAGACTGCTAAGGCTGCTCTAGAGGTGGGTGCATCATTGTCTCCAGACAACTCAAGGTTTGCTACTTTGATCAAAGAATGTGATAAGCTCATTGCAGAAGAATCTTATACCATACCTATTATAGAGGAAAAGACCACAACACAGGATGCTACTCCAAAAGATGTTCAGCAACAAGATGATCTTCTAGAGAAGCCAACAGTTGCAGTGACTAAACCTAAATACAGGCATGAATTCTACCAGAAACCTGATCAGTTGGTTGTGACCATATTTGCAAAGAAAATCCCAAAGGAAAGCATTACTGTTGACTTCGGTGAACAAATACTAAGTGTTAGTATTAATGTCCCTGGAGAAGATGTATATGCTTTTCAACCTCGCTTATTTGGAAAGATTGTACCTTCCAATTGCCGATATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCGAAAGCAGAACCTATTCACTGGACATCTCTAGAATTCACCACAGATATCGTTGTTCCACAGAGGGTTAATGCTTCTTCAGTTACTGGAAGTCAAAGACCTTCTTACCCGTCCTCAAAACAAACAAGAGACTGGGACAAGATTGAAGCTCAAGTCAAGAAAGAGGAGAAAGACGAAAAGCTTGATGGCGATGCTGCGTTGAACAAATTTTTCCGTGAAATATATCAAGATGCAGATGAGGATACAAGGAGGGCAATGAAAAAGTCTTTTGTTGAGTCTAATGGGACAGTGCTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTGCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA 1080 0.4231 MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAELYADRAQANIKLNNFTEAVADANKAIELNSSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEESYTIPIIEEKTTTQDATPKDVQQQDDLLEKPTVAVTKPKYRHEFYQKPDQLVVTIFAKKIPKESITVDFGEQILSVSINVPGEDVYAFQPRLFGKIVPSNCRYEVLSTKIEIRLAKAEPIHWTSLEFTTDIVVPQRVNASSVTGSQRPSYPSSKQTRDWDKIEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSAPDGMELKKWEY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1448 359 Pfam Tetratricopeptide repeat 36 67 IPR019734 GO:0005515
Gso16g1448 359 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Gso16g1448 359 Gene3D - 158 248 IPR008978 -
Gso16g1448 359 CDD p23_CS_SGT1_like 163 246 - -
Gso16g1448 359 Pfam SGS domain 277 357 IPR007699 -
Gso16g1448 359 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515
Gso16g1448 359 ProSiteProfiles SGS domain profile. 269 359 IPR007699 -
Gso16g1448 359 SUPERFAMILY HSP20-like chaperones 145 254 IPR008978 -
Gso16g1448 359 SMART tpr_5 2 35 IPR019734 GO:0005515
Gso16g1448 359 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso16g1448 359 SMART tpr_5 70 103 IPR019734 GO:0005515
Gso16g1448 359 ProSiteProfiles CS domain profile. 157 246 IPR007052 -
Gso16g1448 359 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Gso16g1448 359 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Gso16g1448 359 Coils Coil 42 62 - -
Gso16g1448 359 PANTHER PROTEIN SGT1 HOMOLOG 1 359 IPR044563 GO:0051087
Gso16g1448 359 PANTHER PHOSPHATASE-RELATED 1 359 - -
Gso16g1448 359 Pfam CS domain 161 236 IPR007052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1448 Gso-Chr16 34683092 34687289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1448 1 101 U-box Gene Family AT3G07370 28.571 9.77e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1448 K12795 - gmx:100780174 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1448 16 34683092 34687289 Gso9g1057 9 30539796 30543932 GST