Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1429 ATGAAGTGTGACAGCCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATCCCAGTAACGAAGAAAGATGGCGAAAATCCTACACCTGCAAAAGCGGAAGTTCCTGACAAGGAGTTTGAGAAGCGCATAAGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCAGACCTCTTCAAAGGTGGGCTTCTAAAGCGATGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGAAAAACAATGCTAGCAAAGGCAATTGCAAATGAAGCTGGTGCAAGTTTCATTAATGTCTCAATGTCAACCATCACATCAAAATGGTTTGGAGAGGATGAAAAGAATGTCCGAGCTAAGGTTGCCCCAACAATTATCTTTGTTGATGAGGTTGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCTATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGTGGCTTATCGACCTGTTAGAGAGCTAATACAGCAAGAGAGAATGAAGGACATGGAAAAGAAGAAAAGAGAAGCAGAAGGCCAAAGTTCTGAAGATGCTTCAAACAATAAAGATAAGGAAGAACAAGAAATTACCCTGAGGCCTTTAAACATGGAAGACATGAGAGAGGCTAAGACTCAGGTAGGGTGA 987 0.4215 MKCDSQAPENKSETEKSIPVTKKDGENPTPAKAEVPDKEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKRCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRILVGLPSVENREMILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITVAYRPVRELIQQERMKDMEKKKREAEGQSSEDASNNKDKEEQEITLRPLNMEDMREAKTQVG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1429 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 280 IPR027417 -
Gso16g1429 328 Coils Coil 274 294 - -
Gso16g1429 328 Gene3D - 222 292 - -
Gso16g1429 328 Pfam ATPase family associated with various cellular activities (AAA) 96 220 IPR003959 GO:0005524|GO:0016887
Gso16g1429 328 Pfam AAA+ lid domain 242 286 IPR041569 -
Gso16g1429 328 MobiDBLite consensus disorder prediction 1 38 - -
Gso16g1429 328 CDD AAA 94 221 - -
Gso16g1429 328 Gene3D - 55 221 IPR027417 -
Gso16g1429 328 SMART AAA_5 92 223 IPR003593 -
Gso16g1429 328 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 23 327 - -
Gso16g1429 328 ProSitePatterns AAA-protein family signature. 193 212 IPR003960 GO:0005524|GO:0016887
Gso16g1429 328 MobiDBLite consensus disorder prediction 281 328 - -
Gso16g1429 328 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 23 327 - -
Gso16g1429 328 MobiDBLite consensus disorder prediction 281 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1429 Gso-Chr16 34331147 34333063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1429 56 282 Calmodulin-binding Proteins AT3G56690 37.131 2.35e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1429 - - gsj:114390914 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1429 16 34331147 34333063 Gso20g1317 20 43197537 43205262 PCT
Gso16g1429 16 34331147 34333063 Gso10g2049 10 47511406 47519157 PCT