Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1422 ATGGAGCAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGGGTGGGTGTGGGGCTTGGGTTGAGCTCAGGGCAGAAATGGGTTGGCGGGAACCGTGACTCTGATGAGCTTTCTGTGGAGCAGATTGTGCAGGAGCTCAAGAATCTGGTGGTTGAAGGAAGGGACGGCAACGTTACATTTGAGGACTTTCCTTATTACTTGAGTGAAAGAACTCAAGTTTTGTTGACAAGTGCTGCATATGTTCATTTGAAACATCTTCACTTTTCCAAGCACACCAGGAACCTCCCACCAGCAAGCAGGGCTATTTTGCTATCTGGTCCAGCAGAACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTCTCTGTGAAGTTGCAGAATAAATTTGGATGTTCTAGAAAAGAACCATCTTTCAAAAGGTCAATATCCGAGGCGACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATGCTTTCTTCAACAGGAGAAACGAGAGGAATTCTGCGTCAACAAAGCGGTGCTTCTGTAAGTTCGAATCCTCCAAAGCTTAGGAGGAATGCCTCTGCTTCATATGATATAAGTAGCACTTCTTCCCAATGTGGTCCAACATTTCCAGCTCCTTTAAAGCACACAAGTAGTTTGTGTTTTGATGAAAAGCTCTTTGTACAGTCACTTTACAAGCTTTTGGTTTCTATCACAGAAACTGGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTCATTCTCCAATCACCAAGGTTATATAATTTACTACAAAAAATGATAAAGAAACTATCAGGCTCGGTGTTGATACTTGGTTCCCAGATATTAGATTCAGAAGATGATTGCAAAGAAGTTGATGAAAGGCTCACTGTGCTATTCCCCTACAACATTGAGATCAAAGCTCCCGAAGATGAAACTCATCTTGGCTGCTGGAAAGGCCAACTGGAAAAGGATATGAAAGATATTCAGTTCCAAGATAATAGAAACCATATTGCTGAAGTACTTGCAGCAAATGACATTGATTGTGATGACTTGAACTCAATCTGCCATGCAGACACTATCTTACTCAGTAATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATTCTGGAGAAGATATTACTGGTGCAAAGAATGAAATGAAGTGTGACAACCAAGCACCTGAAAACAAGAGTGAGACAGAGAAATCCATCCCAATAACGAAGAAAGATGGCGAAAATCCTATACCTGCAAAAGCGGAAGTTCCTGACAACGAGTTTGAGAAGCGCATAAGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCAGACCTCTTCAAAGGTGGGCTTCTAAAGCCATGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGAAAAACAATGCTAGCAAAGGCAATTTCAAATGAAGCTGGTGCAAGTTTCATTAATGTCTCAATGTCAACCATCACATCAAAATGGTTTGGAGAGGATGAAAAGAATGTCCGAGCTCTGTTCACACTGGCAGCTAAGGTTGCCCCAACAATTATCTTTGTTGACGAGGTTGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCTATGAGGAAGATTAAAAATGAATTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCAGGAGAGAATGAAGGACATGGAAAAGAAGCAAAGAGAAGCAGAAGGCCAAAGCTCCGAAGATGCTTCAAACAATAAAGACAAGGAAGAACAAGAAATTAAAGCGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGAGTCAGGTGGATGCAAGTTTTGCATCAGAAGGATCCGTAATGAATGAGTTAAAGCAGTGA 2394 0.416 MEQKHVLLSALSVGVGVGVGLGLSSGQKWVGGNRDSDELSVEQIVQELKNLVVEGRDGNVTFEDFPYYLSERTQVLLTSAAYVHLKHLHFSKHTRNLPPASRAILLSGPAEPYQQMLAKALAHYFESKLLLLDITDFSVKLQNKFGCSRKEPSFKRSISEATLERMSGLFGSFSMLSSTGETRGILRQQSGASVSSNPPKLRRNASASYDISSTSSQCGPTFPAPLKHTSSLCFDEKLFVQSLYKLLVSITETGSIILYIRDVEKLILQSPRLYNLLQKMIKKLSGSVLILGSQILDSEDDCKEVDERLTVLFPYNIEIKAPEDETHLGCWKGQLEKDMKDIQFQDNRNHIAEVLAANDIDCDDLNSICHADTILLSNYIEEIVVSALSYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENSGEDITGAKNEMKCDNQAPENKSETEKSIPITKKDGENPIPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAISNEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRILVGLPSVENREMILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQQERMKDMEKKQREAEGQSSEDASNNKDKEEQEIKARPLNMEDMRQAKSQVDASFASEGSVMNELKQ* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1422 797 ProSitePatterns AAA-protein family signature. 647 666 IPR003960 GO:0005524|GO:0016887
Gso16g1422 797 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 797 - -
Gso16g1422 797 MobiDBLite consensus disorder prediction 735 797 - -
Gso16g1422 797 CDD AAA 542 675 - -
Gso16g1422 797 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 797 - -
Gso16g1422 797 SMART AAA_5 540 677 IPR003593 -
Gso16g1422 797 Gene3D - 676 779 - -
Gso16g1422 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 742 IPR027417 -
Gso16g1422 797 MobiDBLite consensus disorder prediction 434 481 - -
Gso16g1422 797 Gene3D - 503 784 IPR027417 -
Gso16g1422 797 MobiDBLite consensus disorder prediction 422 481 - -
Gso16g1422 797 Pfam AAA+ lid domain 696 740 IPR041569 -
Gso16g1422 797 MobiDBLite consensus disorder prediction 735 772 - -
Gso16g1422 797 Pfam ATPase family associated with various cellular activities (AAA) 544 674 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1422 Gso-Chr16 34220877 34243777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1422 470 735 Calmodulin-binding Proteins AT3G56690 36.727 7.89e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1422 - - gmx:100817952 1508.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1422 16 34220877 34243777 Gso9g1039 9 29624943 29632356 GST
Gso20g1317 20 43197537 43205262 Gso16g1422 16 34220877 34243777 PCT
Gso10g2049 10 47511406 47519157 Gso16g1422 16 34220877 34243777 PCT