Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1414 ATGCCAGAGTTTGAGCAGCAACGAAAACTTACAATGATGGAGGATTTTTGGAGCATGTTTTGCGGAGAATCTGATTGTCCTGGAACCGGAGGAAAGCCACCTTTCTGTTATGATTTCAAGTTTTTGAAAGATCCTTCTACATGCACCAACCAGTTCTTGATCATTTGCTTTGATTTGCTACTACTGATCATGCTGGCATTCATTTTGATCCAGAATTCTTTGTTCAGACCATTTCGGGGTCATCAGTTTGGGGTGGCAAGATTTTCAAACTTGCAGCTAATTTCTGCCATAATCAATGGCTCTTTGGGTTTGTTGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAGAAGTTAAGGAAGAGTCTCACTCTTATTCCTCTTGATTTGTGGTTGCTCGAACTTTTTCAAGGATTCAGATGGTTGTTAGTAGGCTTGAGTGTAAGTCTTCAGTTGAAACAGCTTCCAAGGTCATGGTTGTGGTTGTTTTCTCTTCTTACATTATTTTTTTCCACTGTTTTCTGTGTTCTATCCACGTCCTATGCAATAAGTAGCAGAGAATTGTCCTTTAAGGAAGCTTTAGGTGTTCTGTCCTTTCCAGGGTCAGTTTTACTACTCTTGTGCACTTATAAAGCGTATAAATGTGAAGACACTGACGGGGAAATTGATGAAGGCCTTTATGACCCTTTAAATGGTCACTTTAATGAAGTTGATCCTGATAACTATGTAACCCCTTTTGCCAAAGCTGGATTCTTTAGTAGGATGTCGTTTTGGTGGTTGAATCCATTGATGAAAAGGGGCAAAGAGAAAACACTTCAGGACAAGGATATCCCAAAGTTGCGTGAATCAGATCGAGCAGAAAGTTGCTATTTGTCATTTTTAGAACAATTGAACAGAGAAAAGGGAAAAGAACCATTATCACAATCATCAGTTTTGTGGACTATTGTTTTGTGCCACAGGAGAGAGATTTTGATGACTGGATTGTTTGCATTGCTCAAGGTACTCACTTTGTCTACTGGTCCTGTACTTCTGAATGCTTTTATATTGGTTTCTGAAGGTAATGAAAGTTTCAAATATGAGGGTTATGTATTGGTCATATCACTTTTCATTATAAAGATCATAGAGTCTCTGTCACAAAGGCAGTGGTATTTCCGCAGTAGGCTTGTTGGGATGAAAGTTAGGTCACTACTTACAGCAGCAATTTATAAAAAACTATTGAGGTTATCTAGTGCAGCTAGATTGACACATGCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTCCCATATTGGTTTCACCAGTCGTGGACGACAAGCCTTCAAATATGTATTGCATTGTTGATACTTTTTAATGCTATTGGGGTGGCAACAATTGCCTCATTGGTGGTGATAGTTCTCACAGTGCTTTGCAATGCTCCACTGGCAAAGTTGCAGCATAAGTTTCAGAGTGAACTCATGGTGGCACAAGATGAGAGATTGAAGGCCAGTACTGAGGCTCTTACGAATATGAAAGTCCTGAAGCTGTATGCATGGGAAACCCATTTTAAAAATGCTATAGAAAGACTAAGAAATTTGGAACTGAAATTGCTAAGTTCCGTGCAATTGAGAAAGGCATACAACATCTTTCTATTTTGGACCTCACCTATTTTGGTCTCTGCTGCTTCTTTTGGAACATGTTACTTCTTGAACATTCCTTTGCGTGCAAATAACCTTTTCACATTTGTGGCAACTATACGCCTTGTGCAGGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTGGCATTTGCCAGGATCGTTAAATTCCTTGAGGCACCTGAATTGCAAAGTGAAAATTTCCGGAATAGAAATTTTGATGAAAGTAATAAAAGCCCAATTTCAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGCATCAAAGTCAACACTGAGGAACATAAACTTGGAGATTAGACACGGGCAAAAGTTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTCTTAGCTACAATTCTTGGAGAAGTTCCAATGATAAAGGGAACTATTGAAGTTTATGGAAAGTTTGCGTATGTTTCTCAAACAGCATGGATACAGACTGGTACTATACAGGAAAATATTTTGTTTGGATCTGATTTGGATGCTCATAGATATCAAGAAACACTTCGTAGATCTTCGCTACTGAAGGACCTGGAGCTGTTTCCCCATGGAGATCTCACTGAAATAGGTGAGAGGGGAGTTAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGTGCACTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCCACTAATCTGTTTAATGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTAACTCATCAAGTTGACTTTCTTCCAGCGTTTGATTCTGTTTTGTTGATGTCAAATGGGAAAATCCTAGAAGCTGCTCCTTATCATCATTTGTTGTCCTCAAGCCAAGAATTCCAAGATCTTGTTAATGCTCACAAGAAAACTGCCGGTTCTGACAAGCCTATGAATGTTACTTCTTCCAAGAGACGTTCGACATCTGTTAGAGAGATTACACAAGCTTTCAAGGAGAAACATTTAAAAGAAGCAAATGGAGATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACAGGGTTGAAGCCTTACATGCAGTATTTGAATCAGACGAAAGGCTACATATACTTCTTTGTGGCTTCTCTTTGTCATCTCTTGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATTCCCAAGTCAGCACATTGAGGTTGATTGTAGTTTACTTCTTGATCGGGGCTATTTCTACAATATTCTTGTTGATCAGAACTCTACTTATTGTTGCCTTGGGTATTCAATCATCAACAAATTTATTTTTACTGTTAATGAACTCCCTTTTTCGTGCTCCGATGTCCTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGAGTCTCATCAGATCTAAGCATTATGGATCTTGATGTCCCATTTATCATCGCTTATACTGTGGGAGGTACTACAAACTTCTATTCTAATCTCGCAGTTTTAGCAATTATCACTTGGCAAATCTTGCTTGTCTGTGTACCAATGGTTTACATTACAATACGCTTGCAGAGGTACTATTTTTCCACTGCAAAAGAAGTGATGCGCATGAATGGCACAACAAAATCCATCGTAGCTAATCATGTAGCTGAAACTACTGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGAAGATCGTTTCTTTGAGAAGAATCTTGATCTAATTGACATCAATGCTAGTCCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATCCAAAGATTAGAAATAATTAGTGCAATACTTCTTTCTTCCACAGCACTATGCATGGTTATGCTTCCACCCGGGACTTTCAGCTCTGGATTCATTGGCATGGCTCTCTCTTATGGTCTTTCACTAAATGCTCAGCTAGTATTTTCAATTCAAAGTCAATGCAATCTTGCAAATTACATAATCTCTGTAGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCAAAGAAGTAATTGAAGGAAATCGTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAGCTAAATGACTTGAAGATACGATACAGGCTCGATGGACCACTTATACTCCATGGAATCACATGCACATTCAAAGCAGGACACAAGATTGGAATTGTTGGAAGGACAGGCAGTGGAAAGTCCACTCTTATCAGTGCTTTATTTCGTCTAGTGGAGCCGGCAGGTGGAAAAATTGTAGTCGATGGTGTAGACATATCTTCTATCGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGGACTGTTAGGTATAATTTGGACCCTTTAGCTCAACACTCTGATCACGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGCCGTCCAAGAGAAACAAGAGGGCCTGAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTGTTTTGTTTGGGGCGTGCTCTTTTAAGGAGAAGTAGGATATTGGTGCTGGATGAAGCAACTGCATCAATTGACAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGCACAGTGATCACAGTAGCACACAGGATACCAACCGTGATGGATTGCACTATGGTTCTCTCAATCAGCGATGGAAAGTTGGTGGAGTATGATGAACCAACGAGCTTGATGAAGAAAGAAGGATCGCTATTCAAGCAGCTTGTCAAGGAGTACTGGTCTCATTTTCAATCTGCAGAATCACATTGA 4482 0.3983 MPEFEQQRKLTMMEDFWSMFCGESDCPGTGGKPPFCYDFKFLKDPSTCTNQFLIICFDLLLLIMLAFILIQNSLFRPFRGHQFGVARFSNLQLISAIINGSLGLLHLCLGIWVLEEKLRKSLTLIPLDLWLLELFQGFRWLLVGLSVSLQLKQLPRSWLWLFSLLTLFFSTVFCVLSTSYAISSRELSFKEALGVLSFPGSVLLLLCTYKAYKCEDTDGEIDEGLYDPLNGHFNEVDPDNYVTPFAKAGFFSRMSFWWLNPLMKRGKEKTLQDKDIPKLRESDRAESCYLSFLEQLNREKGKEPLSQSSVLWTIVLCHRREILMTGLFALLKVLTLSTGPVLLNAFILVSEGNESFKYEGYVLVISLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSAARLTHAGGEIMNYVTVDAYRIGEFPYWFHQSWTTSLQICIALLILFNAIGVATIASLVVIVLTVLCNAPLAKLQHKFQSELMVAQDERLKASTEALTNMKVLKLYAWETHFKNAIERLRNLELKLLSSVQLRKAYNIFLFWTSPILVSAASFGTCYFLNIPLRANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFARIVKFLEAPELQSENFRNRNFDESNKSPISIKSADFSWEGNASKSTLRNINLEIRHGQKLAICGEVGSGKSTLLATILGEVPMIKGTIEVYGKFAYVSQTAWIQTGTIQENILFGSDLDAHRYQETLRRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGKILEAAPYHHLLSSSQEFQDLVNAHKKTAGSDKPMNVTSSKRRSTSVREITQAFKEKHLKEANGDQLIKEEEREIGDTGLKPYMQYLNQTKGYIYFFVASLCHLLFVICQILQNSWMAANVDNSQVSTLRLIVVYFLIGAISTIFLLIRTLLIVALGIQSSTNLFLLLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDVPFIIAYTVGGTTNFYSNLAVLAIITWQILLVCVPMVYITIRLQRYYFSTAKEVMRMNGTTKSIVANHVAETTAGVVTIRAFEEEDRFFEKNLDLIDINASPFFHSFASNEWLIQRLEIISAILLSSTALCMVMLPPGTFSSGFIGMALSYGLSLNAQLVFSIQSQCNLANYIISVERLNQYMHIPSEAKEVIEGNRPPSNWPVAGKVELNDLKIRYRLDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGVDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLAQHSDHEIWEVLGKCQLREAVQEKQEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPTSLMKKEGSLFKQLVKEYWSHFQSAESH* 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1414 1493 CDD ABCC_MRP_domain1 638 838 - -
Gso16g1414 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1210 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g1414 1493 CDD ABCC_MRP_domain2 1245 1465 - -
Gso16g1414 1493 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 84 1493 - -
Gso16g1414 1493 Gene3D - 636 869 IPR027417 -
Gso16g1414 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 323 603 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g1414 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 861 IPR027417 -
Gso16g1414 1493 CDD ABC_6TM_ABCC_D2 933 1222 IPR044726 GO:0140359
Gso16g1414 1493 SMART AAA_5 1273 1465 IPR003593 -
Gso16g1414 1493 SMART AAA_5 665 838 IPR003593 -
Gso16g1414 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 861 IPR003439 GO:0005524
Gso16g1414 1493 Gene3D ABC transporter type 1, transmembrane domain 894 1229 IPR036640 GO:0005524|GO:0016021
Gso16g1414 1493 Gene3D ABC transporter type 1, transmembrane domain 294 620 IPR036640 GO:0005524|GO:0016021
Gso16g1414 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1247 1481 IPR003439 GO:0005524
Gso16g1414 1493 Pfam ABC transporter 1264 1412 IPR003439 GO:0005524
Gso16g1414 1493 Pfam ABC transporter 656 790 IPR003439 GO:0005524
Gso16g1414 1493 Pfam ABC transporter transmembrane region 323 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g1414 1493 Pfam ABC transporter transmembrane region 931 1171 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso16g1414 1493 CDD ABC_6TM_ABCC_D1 325 611 IPR044746 GO:0140359
Gso16g1414 1493 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524
Gso16g1414 1493 SUPERFAMILY ABC transporter transmembrane region 930 1227 IPR036640 GO:0005524|GO:0016021
Gso16g1414 1493 SUPERFAMILY ABC transporter transmembrane region 311 616 IPR036640 GO:0005524|GO:0016021
Gso16g1414 1493 Gene3D - 1230 1483 IPR027417 -
Gso16g1414 1493 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 84 1493 - -
Gso16g1414 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1237 1479 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1414 Gso-Chr16 34118935 34130904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1414 638 885 Calmodulin-binding Proteins AT2G36910 29.057 5.02e-22 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1414 16 34118935 34130904 Gso20g1326 20 43298560 43306569 PCT
Gso16g1414 16 34118935 34130904 Gso10g2031 10 47325283 47333176 PCT
Gso20g1326 20 43298560 43306569 Gso16g1414 16 34118935 34130904 PCT
Gso10g2031 10 47325283 47333176 Gso16g1414 16 34118935 34130904 PCT