Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1369 ATGGCAGATCTTGCTAGCTACGGGAAGGCCTACCGTGACATTGAACAACAAGTATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCCATGATGAATCATCCTTAATCTGGATTACAAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGTGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTACAGTAACGGAAAGCGATCGCTTGATTTGATTTGCAGAGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCACTGATAGCTTCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGTCTCATTCTTAATGATAGCAGAGACTTAACATCAAATAATCCAAGTGTAAGTTTGGCTAGCACGTCACGAGGCATTTGTTCTCCTGACATTTCTGTGACTCTTCCAAATACTTCACCAAAGTCCTTTCGGTCTGACAATACAATTTCTGAAAGGTCACATGCGCCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGCTTCAGATGTATTTCGTGTCAGTGTTTCCAGTGCCCCAAGTACATCTAGTCATGGATCTGCACCTGATGACTGTGATGCTTTGGGGGATGTATACATATGGGGAGAGGTTACCTGTGAAAATGTTAAAGTTGGTGCTGATAAAAATGTAAATTATGTCAGCCCCAGGGCAGATGTACTTCTCCCCAGACCACTGGAATCCAGCGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCAGGAGGATGCCTTGGTCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTGTTGATTTTGTTGCCTGTGGTGAGTTCCATTCCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACCCATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTCAGTCATTGGATACCAAAGAGAATTGCTGGTCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGGTAACTTCAACAGGGCAGCTGTTTACATTTGGTGATGGAACATTCGGTGTCTTGGGCCATGGAGATAGGCAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTATTGGGGTTGAGAACAATAGCTGTTGCTTGTGGAGTGTGTCATACTGCAGCTGTTGTAGAGGTTATCGCAACACACTCCAGTACAAGCATATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGCCTTAAACCAACTTGTGTGCCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGCAGGCCTGACAAAATCTGGATGTGTTTTCACTATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCTCAATCTGACGGAAAGGTTCCATGCTTGGTCGGAGACAAGATTGCCAGGGAATCGATTGAAGAAATTGCTTGTGGAGCATATCATGTAGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGACTGGGTCATGGAGATATTGAAGATCGTAAAACACCGGCTTTGGTTGAAGCATTAAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAATTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTACGTGTAGACAGGCATTTGGCTTCACTAGAAAGAGACACAATTGTTATAACTGCGGACTCGTCCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCACACGCTCCTAATCCTGGAAAGCCGTATCGTGTGTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCTGAAGCTAGCAATAGTAATAGGAGGAATGCCTTGCCTCGTCTGTCAGGTGAGAACAAGGATAGGCTAGACAAGTCTGACCTAAGATTGTCCAAGGCAGTAATTCATTCTAACATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAGCAAGGAAAGAAAGGTGATACATTCTCACTGGTTCACCCCTCACAACCACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCCTCTGCTCTTGATCTGAGACGAACAGTTCCAAGACCTGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTCTCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACGCCTATTCCAACAACTTCAGGACTTGCCTTCTCAAAAAGTATTTCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTGCATGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAATACTCAAGAAGCTATGGCACTGGCTGCTGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATTAAGTCGCTCACGGCTCAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCTGGAGTGTATGATGCTGAGAACGTTAGACCAGCTTACCTACCAAATGGTATTGAGCCAAATGGCATCCGCCATCCAGATTCAAATGGGGAGCAGCACTCAAGAGCAGAGTCAATCAGTGCATCTAGTTTGGCCTCCATGGGACTTGAATCTGCTCTATTGAATAGAACTGCAGGGAATTCGCCAGGAACATATGGAACTAATCCTCACCAGCAAATTCGGAGCCCTGTGTCCTCTAATGGGGCCAATAATTATCCAGATGTTAAATTGCCTAATCGTGGTGGTGCAATTCAGGCAAGCAGCGGTAATGTGTCAGATACTGCTGATGGTCGAGATTCTGGGAATTTCCACAACGGCGATAGTGGTTTGAAATTGAGGAGTGTTGCACCTGCTGCTGATAGTAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTTGTGGCACTGAGTGATGGAACGAGAGATCTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTTGGGGAGCACCAAGCAGAAACCTGGTGGTCAGAGAACCGAGACAAGGTATATGAAAGATACAATGTTCGCAGCACGGATAAGTCGGCCAACCAAGCAGCACGTAGTTCAGAAGGTGCTGTTTCGCCTGTTTCCCAAACTTAG 3363 0.4425 MADLASYGKAYRDIEQQVLIALKKGAQLLKYGRKGKPKFCPFRLSHDESSLIWITSSGERNLKLSSVSRIIPGQRTAVFQRYLCPEKDYLSFSLIYSNGKRSLDLICRDKVEAEVWIAGLKALIASGQGGRSKIDGWSDGGLILNDSRDLTSNNPSVSLASTSRGICSPDISVTLPNTSPKSFRSDNTISERSHAPPDPTNMQVKGSASDVFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVTCENVKVGADKNVNYVSPRADVLLPRPLESSVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGCLGHGVGKNVVQPRLVEALTSTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIAGPLEGLQIAFVACGPWHTALVTSTGQLFTFGDGTFGVLGHGDRQNVSYPREVESLLGLRTIAVACGVCHTAAVVEVIATHSSTSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTKSGCVFTMGSTVYGQLGNPQSDGKVPCLVGDKIARESIEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAAHAPNPGKPYRVCDSCYAKLNKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAVIHSNMDLIKQLDSKAAKQGKKGDTFSLVHPSQPPSLLQLKDVVLSSALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLAFSKSISDSLKKTNELLNQEVQKLHAQVESLRQRCELQELELQRSAKNTQEAMALAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDAENVRPAYLPNGIEPNGIRHPDSNGEQHSRAESISASSLASMGLESALLNRTAGNSPGTYGTNPHQQIRSPVSSNGANNYPDVKLPNRGGAIQASSGNVSDTADGRDSGNFHNGDSGLKLRSVAPAADSNQVEAEWIEQYEPGVYITLVALSDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSANQAARSSEGAVSPVSQT* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1369 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1101 - -
Gso16g1369 1120 Pfam Transcription factor regulating root and shoot growth via Pin3 1039 1094 IPR013591 -
Gso16g1369 1120 Pfam Transcription factor BRX N-terminal domain 874 909 IPR027988 -
Gso16g1369 1120 MobiDBLite consensus disorder prediction 956 1023 - -
Gso16g1369 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Gso16g1369 1120 Gene3D - 187 458 IPR009091 -
Gso16g1369 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Gso16g1369 1120 SMART fyve_4 621 690 IPR000306 GO:0046872
Gso16g1369 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Gso16g1369 1120 MobiDBLite consensus disorder prediction 1097 1120 - -
Gso16g1369 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 296 IPR000408 -
Gso16g1369 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 1101 - -
Gso16g1369 1120 MobiDBLite consensus disorder prediction 783 815 - -
Gso16g1369 1120 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Gso16g1369 1120 SUPERFAMILY RCC1/BLIP-II 235 624 IPR009091 -
Gso16g1369 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Gso16g1369 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Gso16g1369 1120 MobiDBLite consensus disorder prediction 177 203 - -
Gso16g1369 1120 Coils Coil 823 864 - -
Gso16g1369 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Gso16g1369 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 349 399 IPR000408 -
Gso16g1369 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Gso16g1369 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Gso16g1369 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Gso16g1369 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Gso16g1369 1120 MobiDBLite consensus disorder prediction 916 941 - -
Gso16g1369 1120 CDD PH_PLC_plant-like 12 125 - -
Gso16g1369 1120 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Gso16g1369 1120 MobiDBLite consensus disorder prediction 997 1015 - -
Gso16g1369 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Gso16g1369 1120 SUPERFAMILY PH domain-like 15 124 - -
Gso16g1369 1120 ProSiteProfiles BRX domain profile. 1040 1095 IPR013591 -
Gso16g1369 1120 Gene3D - 14 130 IPR011993 -
Gso16g1369 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Gso16g1369 1120 Pfam Pleckstrin homology domain 14 124 IPR001849 -
Gso16g1369 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Gso16g1369 1120 CDD FYVE_like_SF 632 685 - -
Gso16g1369 1120 PRINTS Chromosome condensation regulator RCC1 signature 299 315 IPR000408 -
Gso16g1369 1120 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Gso16g1369 1120 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Gso16g1369 1120 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Gso16g1369 1120 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Gso16g1369 1120 SUPERFAMILY FYVE/PHD zinc finger 623 698 IPR011011 -
Gso16g1369 1120 MobiDBLite consensus disorder prediction 956 987 - -
Gso16g1369 1120 Coils Coil 872 899 - -
Gso16g1369 1120 Gene3D - 459 619 IPR009091 -
Gso16g1369 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 696 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1369 Gso-Chr16 33315993 33326414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1369 1041 1111 Major Intrinsic Protein MIP AT1G31880 51.389 1.78e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1369 - - gmx:100805364 2019.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1369 16 33315993 33326414 Gso2g0690 2 7236429 7245536 GST
Gso16g1369 16 33315993 33326414 Gso20g1329 20 43352828 43361089 PCT
Gso16g1369 16 33315993 33326414 Gso10g2027 10 47281418 47289842 PCT
Gso20g1329 20 43352828 43361089 Gso16g1369 16 33315993 33326414 PCT
Gso10g2027 10 47281418 47289842 Gso16g1369 16 33315993 33326414 PCT