Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1368 ATGGCAAAGGTAAGAGATCAGAAGCTATACGTCACCGTTCCGAGTCTCTTTCGGTGCCCAATCTCCATGGACGTGATGCGCTCTCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCACTGGCTCGACTCAGGACACGACACCTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTCCACCGCCTCATCCGCCTCTGGCTCATCTCCTCCTCCTCCTCCGAACCTCCCTCCCCCTCCTCCTCCGCCGACCACCTCCGCCCTCTCCTCCGCCAAATCCAAACCTCCGACGACAACGTCCCCGGTATTCTCTCCAAAATCGCCGAATTCGCCAAGAAATCCGGTGAGAATCGCCGGTCTCTCGCCGCCTTCCCCGGCTTCGACTCCGCCGTGGTCCGCGCGCTCACCGGAAGCAATTCACTCATCGACGCGGCGGAAAACGCGATCTATCTTCTCGGTTCAGTTTTCCGAGAAAACGGAAAGTCAACTGGAGAGAGAATTCGAAAGCTGATTCTTGACGCTCGCGAACAATGCTTTGATGCGATGATATTTGTTCTCAGAAACGGATCTCTGAAATCAAAGATTGAAACGGTTAAGGTTTTGGAGTTTCTCGCGTTCGATTTTCAATCTTCCAAATCGATCAGCGAAGCATGCGGATTGTTGTCGTTGCTCGCGAGTTTTTTAAAGGACGGCGGAGAGGAGCTAAACGACGCCGTTTTGTCGCTGCTCGGCGTCGTTTCGGTTACTCACTCCGCGAAGGTGGAACTCGTTAGCTCCGGAGTTGTTGAAGTGGTTACGAAATTGCTGCGAGCGTGTTCGGCGGCGACGGCGGAGAGGTGTTTGAGAATGCTGGCGGTGTTGGCCACGTGCGCGGAGGGTCGGGCGGCGATGGCGGAGGAGCCGTCGTGTGCTGCGGCGGTGGTGGAGAGGATTACGAAGGCGTCAAAGGCTGCGGCGGCGGACGCGGTGGCGGTGCTGTGGAGCTTGTGCTGTTTGTGCAGGAACGTGAAGGTGAGAGATGAGGTGGCAAAGCGAAACGGCGTCGTGGTGGTTTTGTTGGTTATGCAGAGGGGGTGGGAGGAGCACGTGAGAAGCATGTGCGTGGATTTGATTAAGGTTTTGAAGGGTGCGTGTAAGAACGGGTTGGGGTTGGAACTAGGATGCTATGACACCAAAACCACTCATATAAAACCTTGCTAA 1236 0.5591 MAKVRDQKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQHWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLISSSSSEPPSPSSSADHLRPLLRQIQTSDDNVPGILSKIAEFAKKSGENRRSLAAFPGFDSAVVRALTGSNSLIDAAENAIYLLGSVFRENGKSTGERIRKLILDAREQCFDAMIFVLRNGSLKSKIETVKVLEFLAFDFQSSKSISEACGLLSLLASFLKDGGEELNDAVLSLLGVVSVTHSAKVELVSSGVVEVVTKLLRACSAATAERCLRMLAVLATCAEGRAAMAEEPSCAAAVVERITKASKAAAADAVAVLWSLCCLCRNVKVRDEVAKRNGVVVVLLVMQRGWEEHVRSMCVDLIKVLKGACKNGLGLELGCYDTKTTHIKPC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1368 411 CDD RING-Ubox_PUB 17 59 IPR045210 -
Gso16g1368 411 SUPERFAMILY RING/U-box 9 82 - -
Gso16g1368 411 PANTHER WDSAM1 PROTEIN 7 411 IPR045185 GO:0061630
Gso16g1368 411 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Gso16g1368 411 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Gso16g1368 411 Gene3D - 80 392 IPR011989 -
Gso16g1368 411 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 411 - -
Gso16g1368 411 SUPERFAMILY ARM repeat 95 386 IPR016024 -
Gso16g1368 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 79 IPR013083 -
Gso16g1368 411 Pfam U-box domain 13 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1368 Gso-Chr16 33294918 33296617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1368 4 410 U-box Gene Family AT5G09800 37.947 4.21e-81 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1368 - - gmx:100786235 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1368 16 33294918 33296617 Gso2g0689 2 7217114 7218337 GST