Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1351 ATGTCATCAAATCAAGCATCCCTTAACCTTAACCAAGCCAAATTTGTCCTTCCAACCAATGACGACCTTGAGCAACAACAACAACAAGCAACAACAACTCTAGAGATTGAATCTGATGAGGACACCTTTGACTACTCAAAAAGATCTCAATGGCTCCGCGCCGCTGTTCTGGGAGCCAATGATGGGTTGGTCTCAACAGCATCAATCATGATGGGTGTTGGAGCAGTGAAGCATGACATCAAGGCCATGATCCTATCAGGGTTTGCAGGGTTGGTGGCAGGGGCATGTAGCATGGCCATAGGTGAGTTTGTGTCTGTTTACTCACAACTAGACATTGAGGTTGCTCAAAGGAAGAGGGAGAAGGAAAGGGGCCAAAGAAGAGTGAGAGATCCAGAGGAAGACACCAATGAAGAGAAAGAGAGTTTGCCAAACCCTTTGCAAGCAGCAGCAGCCTCAGCTTTGGCCTTTTCTGTTGGTGCAATGGTGCCATTGCTTGCAGCATCATTTATAAGGGAATATAAGGTGAGGCTTGGAGTGATTGTTGCTGCTGTGACTTTTGCTTTGGTGGTGTTTGGTTGGTTAGGGGCTGTGTTGGGTAAGGCTCCAGTGTTGAGGTCTGCTTTGAGGGTCTTGTTTGGGGGTTGGATGGCCATGGCAATCACTTTTGGGTTAACCAAGTTGATTGGATCAAGTGCACTTTAG 702 0.4715 MSSNQASLNLNQAKFVLPTNDDLEQQQQQATTTLEIESDEDTFDYSKRSQWLRAAVLGANDGLVSTASIMMGVGAVKHDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEVAQRKREKERGQRRVRDPEEDTNEEKESLPNPLQAAAASALAFSVGAMVPLLAASFIREYKVRLGVIVAAVTFALVVFGWLGAVLGKAPVLRSALRVLFGGWMAMAITFGLTKLIGSSAL* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1351 233 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 24 230 - -
Gso16g1351 233 Pfam VIT family 136 225 IPR008217 GO:0005384|GO:0030026
Gso16g1351 233 Pfam VIT family 52 127 IPR008217 GO:0005384|GO:0030026
Gso16g1351 233 CDD Nodulin-21 50 202 - -
Gso16g1351 233 Coils Coil 20 40 - -
Gso16g1351 233 MobiDBLite consensus disorder prediction 120 140 - -
Gso16g1351 233 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 24 230 IPR008217 GO:0005384|GO:0030026
Gso16g1351 233 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1351 Gso-Chr16 33020204 33021268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1351 33 233 Nodulin-like Gene Family AT3G43660 70.792 3.39e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1351 K22736 - gmx:100807991 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1351 16 33020204 33021268 Gso2g0677 2 7088798 7090044 GST
Gso16g1351 16 33020204 33021268 Gso20g1335 20 43448404 43449442 PCT
Gso16g1351 16 33020204 33021268 Gso10g2020 10 47186962 47187928 PCT
Gso20g1335 20 43448404 43449442 Gso16g1351 16 33020204 33021268 PCT
Gso10g2020 10 47186962 47187928 Gso16g1351 16 33020204 33021268 PCT