Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1345 ATGGAAGGCAAGTTGTCAAAGAGAGGTATGCTTCAAGGTAGGGGTCATTTTGGTGGTTCTGATTTGCCTAGATCAATGCGAGTTCGTCGAAAAGAGAAGCATCCTCATTCCATGAACCAACAACATATTCATCATTGCCAAAGGTCTTTAGTGCACTCCTCAATTCATGATGGTTTGCCTCTTACAATGGGATCCTTCCAGAAGTGTGATCATCAGATTTTGTCAATGACTGAGTTTAATCAAAGGGGTATACACAAGACCTCACCAAGTGATGCAAGTTTAGTCGAAGAAGGTGTTGATGGTCATCATGAAGCGGGTAAAGGGAAAAAAAGTACTCCTTGGCAGCAGGTGAAATGGACTGATAAGATGGTAAAACTTCTAATAATGGTCATGTCTTACATAGGTGAGGATGCAACTTCTGACAACAGTAGCAAAAGAAGAAAATTTACAGTCCTACAAAATAAAGGGAAATGGAAATCCATTTCTAAGGTCATGGCTGAAAGAGGTTACCATGTTTCACCTCAACAATGTGAGGATAAATTCAATGACCTTAGTAAAAGCTACAAAAAGCTTAATGTTATGCTTGGGAGGGGAACTTCCTGTCGGGTTGTTGAAAATCCTTCTTTGTTGGATTTGATCGATTATCTTTCCGAGAAAGAAAAGGACCATGTTCGAAAAATATTGAGCTCCAAACATCTGTTTTATGAAGAGATGTGTTCTTACCATAATGGTAATAGATTGCATTTACCCCATGATCCAACATTGCAACAATCACTGCAGGCGGCTCTTCAAAATAGAGATGACCATGATAGTGATGATATCAGAAGATCCCATCACTATGATTATGACAAAGATGATATAGATATGGAAAGTAGTGATCAGGATGACTTTGAAGAGAATTATGCTTCCCTTGCAAATAGTAGAGGAGTCTATGGGGCAACAAGGCAACCTTTGAAGAGATTAAAAACTGGGCAAGGACAAGTAGATGTTGCTACTTTTGGGAGTGCTTTAAACAGTAGAGAGTACAACAAAATTTCATATTCTCCTGTAGTTCAATCTGATGGGAATCAAGATTTCCTTCCAAAAATGAGAGCAACTTGGTTACAAAAGCAATCGGTTGAATCTCGTTCACTTCAGTTAGAAGAGCAGAAGCTACAAATTCAAGACGAGATGTTGGAGCTGAAGAAACAAAGATTCAAGTGGCAGAATTTTAGTAGGAAAAAAGATCTCGAGTTAGAAAAGTTGAAGCTAGAGAATGAAAGAATGAAGATTGAGAATGAACGTATTGCTTTAAAATTGAAGCGCCAGGAAATTAGTGCCAACTTTAACTAG 1332 0.3836 MEGKLSKRGMLQGRGHFGGSDLPRSMRVRRKEKHPHSMNQQHIHHCQRSLVHSSIHDGLPLTMGSFQKCDHQILSMTEFNQRGIHKTSPSDASLVEEGVDGHHEAGKGKKSTPWQQVKWTDKMVKLLIMVMSYIGEDATSDNSSKRRKFTVLQNKGKWKSISKVMAERGYHVSPQQCEDKFNDLSKSYKKLNVMLGRGTSCRVVENPSLLDLIDYLSEKEKDHVRKILSSKHLFYEEMCSYHNGNRLHLPHDPTLQQSLQAALQNRDDHDSDDIRRSHHYDYDKDDIDMESSDQDDFEENYASLANSRGVYGATRQPLKRLKTGQGQVDVATFGSALNSREYNKISYSPVVQSDGNQDFLPKMRATWLQKQSVESRSLQLEEQKLQIQDEMLELKKQRFKWQNFSRKKDLELEKLKLENERMKIENERIALKLKRQEISANFN* 444
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1345 443 Coils Coil 370 397 - -
Gso16g1345 443 MobiDBLite consensus disorder prediction 1 40 - -
Gso16g1345 443 MobiDBLite consensus disorder prediction 265 286 - -
Gso16g1345 443 MobiDBLite consensus disorder prediction 263 294 - -
Gso16g1345 443 PANTHER F16F4.11 PROTEIN-RELATED 1 442 - -
Gso16g1345 443 PANTHER F16F4.11 PROTEIN 1 442 - -
Gso16g1345 443 Pfam Myb/SANT-like DNA-binding domain 117 241 IPR044822 -
Gso16g1345 443 Gene3D - 119 190 - -
Gso16g1345 443 Coils Coil 405 437 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso16g1345 Gso-Chr16 32976316 32978507 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso16g1345 Myb_DNA-bind_4 1.8e-21 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1345 - - gmx:100805861 837.41
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1345 16 32976316 32978507 Gso20g1340 20 43492659 43494954 PCT
Gso16g1345 16 32976316 32978507 Gso10g2015 10 47147373 47149626 PCT
Gso20g1340 20 43492659 43494954 Gso16g1345 16 32976316 32978507 PCT
Gso10g2015 10 47147373 47149626 Gso16g1345 16 32976316 32978507 PCT