Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1344 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGCTCTGGTGATGCAGTGGCAGCACCACCACCTGCTGCATCAGGAGGAGCACATGATGGTGGTGTTGACGGCGGTGACGGTGGCGGTGGCGGATCAAATTCAGGGGATGATAGAGTTGAGGAAGGTGAGAGGAGCTTTGGTGGGAACAGGTGGCCGAAGCAAGAGACTTTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGACTTTTAGAGATGCAAGTGTAAAGGGTCCCTTGTGGGAAGAGGTTTCTAGGAAGCTGGCAGAGCTTGGCTACAACAGAAATGCCAAGAAATGCAAAGAGAAGTTTGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGACGAAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATGGAAAGCAATCTCCAACACCTCCAAAGCCGCCACCACAAACAACAGCACTATCAGCAACACCAGTGTCAATAGTGGTAACAACAACTACAACTACACCATCATCAATAATAATGCCACTTCCATTGCCACCAGTGTCTAATAACAACAACAACACCACTGTTCCATCCACAACATCACTTCCTATGCCTCAAAGCATTCTCAACATAACACCACCATCAACACTGAACATCACAATCCCTTCTTTTCCACCATCAAACCCTACAACATACTTCCCAACACAAACACCAAACCCTACTAGCAACAACAACAACAACCCTCCAAGCACCATCACCCCACCTTCCTTCCCCAATTTCCCCGCCGATCTCTTGTCGAATTCGAGTTCTTCATCGACTTCTTCGGAGGAAACACCGACGACGGAGGCCAGAGGGCGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGGCTCATGAAGGAGGTGATAGAGAAGCAGGAGGAGCTGCAAAGGAGGTTCTTGGAGGCCATAGAGAAGAGAGAACAAGAGCGTGTGGTGAGAGAGGAAGCGTGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTAGCACAAGAGAGGTCCATTGCCGCAGCAAAAGATGCTGCTGTTATGACATTTTTGCAAAAGATAGCCGAACATCAGCAACAAGAAACTATCAATCTTGAACCAGCATTGAATAACAACAGCATCACTGTTGTTCCACAGCAACCAGTGCCACAAGCAACACCAACATCAACTCCAACACCACAACAAGCACAAACAACAACAGTTCCTGAGGCCCCACAAGTGCAGCCATTGGTCCCACAACTACAACAACAACAACAAATAGTGGTGAGTAATGTGGAAATCAACAAAGCTGATAATAACGGTGAGAATTTGATGATGGAAGCAAGCTCTTCAAGGTGGCCAAAAGTGGAGGTACAAGCACTGATAAACCTGAGGACAAGCTTGGAAACAAAGTACCAAGAAAGTGGACCAAAAGGGCCACTGTGGGAGGAGATCTCAGCGTTGATGAGGAAAATGGGGTACAACCGGAACGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGCAACAAGAAGAGGCCTGAAGATTCAAAGACATGTCCCTATTTTCACCAGTTGGAGGCTCTATACAGGGAGAAGAACAAGGGAGAGGGGCAGATGAAGCCGGAGAGCATGATGGCGCCGCTCATGGTGCAGCCGGAGCAACAATGGCCTCCTCAAACAACGCTTGTGGTACCGCCAGAAGTAACCATGGGAGACACCCAGAATGACCCCATGGACCGGCAGTACCATGAGGAGAATGAGGATGACGAGGACGACAAGGAAATTGGAGATGAAGACGAGGATGAGGACGACGAAGGAGGTGATAATTATGAGATAGTTGCGAGCAAACCAGCCACAGCTGATGCTTCCGGAGAGTGA 1968 0.4822 MLGDSAVLGTGGGGSGDAVAAPPPAASGGAHDGGVDGGDGGGGGSNSGDDRVEEGERSFGGNRWPKQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYNRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIHGKQSPTPPKPPPQTTALSATPVSIVVTTTTTTPSSIIMPLPLPPVSNNNNNTTVPSTTSLPMPQSILNITPPSTLNITIPSFPPSNPTTYFPTQTPNPTSNNNNNPPSTITPPSFPNFPADLLSNSSSSSTSSEETPTTEARGRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVVREEAWRMQEMQRINREREILAQERSIAAAKDAAVMTFLQKIAEHQQQETINLEPALNNNSITVVPQQPVPQATPTSTPTPQQAQTTTVPEAPQVQPLVPQLQQQQQIVVSNVEINKADNNGENLMMEASSSRWPKVEVQALINLRTSLETKYQESGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYREKNKGEGQMKPESMMAPLMVQPEQQWPPQTTLVVPPEVTMGDTQNDPMDRQYHEENEDDEDDKEIGDEDEDEDDEGGDNYEIVASKPATADASGE* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1344 655 MobiDBLite consensus disorder prediction 196 219 - -
Gso16g1344 655 MobiDBLite consensus disorder prediction 1 67 - -
Gso16g1344 655 ProSiteProfiles Myb-like domain profile. 465 529 IPR001005 -
Gso16g1344 655 Gene3D - 64 125 - -
Gso16g1344 655 Gene3D - 473 534 - -
Gso16g1344 655 MobiDBLite consensus disorder prediction 405 430 - -
Gso16g1344 655 CDD GT1 471 536 - -
Gso16g1344 655 SMART sant 60 122 IPR001005 -
Gso16g1344 655 SMART sant 469 531 IPR001005 -
Gso16g1344 655 Pfam Myb/SANT-like DNA-binding domain 471 558 IPR044822 -
Gso16g1344 655 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
Gso16g1344 655 MobiDBLite consensus disorder prediction 247 263 - -
Gso16g1344 655 CDD GT1 62 127 - -
Gso16g1344 655 MobiDBLite consensus disorder prediction 153 176 - -
Gso16g1344 655 MobiDBLite consensus disorder prediction 273 292 - -
Gso16g1344 655 ProSiteProfiles Myb-like domain profile. 62 120 IPR001005 -
Gso16g1344 655 MobiDBLite consensus disorder prediction 613 638 - -
Gso16g1344 655 PANTHER - 1 646 - -
Gso16g1344 655 Coils Coil 306 337 - -
Gso16g1344 655 MobiDBLite consensus disorder prediction 593 655 - -
Gso16g1344 655 MobiDBLite consensus disorder prediction 232 302 - -
Gso16g1344 655 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1344 Gso-Chr16 32944201 32948003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1344 60 585 Trihelix Transcription Factor Family AT1G76890 47.253 9.45e-143 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso16g1344 Myb_DNA-bind_4 5.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1344 - - gmx:100804788 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1344 16 32944201 32948003 Gso2g0674 2 7029067 7033855 GST
Gso16g1344 16 32944201 32948003 Gso20g1341 20 43513840 43517239 PCT
Gso16g1344 16 32944201 32948003 Gso10g2014 10 47123702 47127225 PCT
Gso20g1341 20 43513840 43517239 Gso16g1344 16 32944201 32948003 PCT
Gso10g2014 10 47123702 47127225 Gso16g1344 16 32944201 32948003 PCT