Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1343 ATGCAGCTAGGAGACTCAAGTGTGTTGGAGATCTCCTCCCATACCCAGCCTGAGATGGCGGTGACGGCAGTAGTGTCGCCACCAGAAGAAGTAGTCCATGATGGCAGCGACAACAGTGGTGATGGTGGTAGTGGTGATGGTGGTGGTGGTGAGATGATTGGGATGGACTTGGATGCAAATTCAGGTGAAGGAAATGAAGGTAATAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATACAGTTTTTCGAGATTCAAGTCTTAAAGGTCCACTTTGGGAAGAAGTTTCAAGGAAATTGGCAGAACTTGGATATCAAAGAAGCGCAAAGAAGTGCAAGGAAAAATTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGACAACAAAAGTGGCAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAACCAATTCACAACAGTCTCTTACCCGCCAAAACCACAACCTACTTCTACTTTGGCAACAACAAACCCATTGACATTGCCAACAAGGCCAAGTGATCATGGTAACAAAGTTATCTCTTATGTCACAACTTTTCCTTCCACAAACCCTACTCTCATTTCACCTTCTCCACAAACCAACACTACCACCACCACCACCACAACAACATCCACAACCAACCCTAGAGATTCATCACGACCACAAACCAACAACAACAATAATAGTGTCACACACTCTTTGCCAAACATGAACACCTCTTTCTCTACCACCACTGCCTCCACCTCATCCTCCACAGCATCAGATGAAGACTTGGAAGAGAGGTATAGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCTTGTTGAAGCAAGAGGAGATGCAAAAGAAGTTCTTGGAAGCCATGGACCAAAGGGAGAGGGAAAGGGTGGCACAACAAGACAATTGGAGGATGCAAGAAATGGCAAGGATCAATAGGGAGCATGAGATTCTTGTTCAAGAGAGATCAACAGCAGCAGCCAAAGATGCTACAGTCATTGCATTATTGCAAAAGATGTATGGCCAACAAAACCCCACACAACAAGTTGAAGTAGAGCCACCACCACAACAGAAGCAAACAATTCCCCAATCGCTGCCTCCAATATTAATGCCAAACAATAATTTCGAGGTCAAGAAAATAAATAATGGTCACAGTGTTACTAGTACTACTACTGGTACTGTTGCTACTGCTGCTACTACTACTACTACTTCGCCGGTGAATTCTTCTTCTTCTCGGTGGCCGAAGGCGGAAGTTCATGCTTTGATAAGGATAAGGACAAGTCTAGAAACCAAGTATCAAGAGAATGGACCAAAAGCTCCATTGTGGGAAGATATCTCAATTGCAATGCAAAGGCTTGGGTACAACCGGAGTGCAAAGAGATGCAAGGAAAAATGGGAGAACATCAACAAGTACTTCAAGAGAGTGAGGGAGAGTAGCAAAGAAAGGCGTGAAGATAGCAAGACATGTCCCTATTTCCACGAGCTTGAAGCTCTATACAAAGAAAAGAGCAAATCGTCCAAGAACCCCTTTGGCATCTTCCAGAATATGAAGCCTAATGAGATGATGCTGATGATGACGGAGCCACTGATGGTGCAACCGGAGCAACAATGGAGGCCCCCACCTCAATCATTGGAAGAGGGTGTAGGGATGGAGAATGCAAGTGAAGAATATCATGAAAATGAAGAAAATGGTGGTGACGATGATGATAACATTGAAGAGGATGGAGATAGTGTGGAAGATGAAGGAGCAAACCCGTGTGAGATTGCGACAAATAATTAA 1857 0.4421 MQLGDSSVLEISSHTQPEMAVTAVVSPPEEVVHDGSDNSGDGGSGDGGGGEMIGMDLDANSGEGNEGNNKMSFGGNRWPRQETLALLKIRSDMDTVFRDSSLKGPLWEEVSRKLAELGYQRSAKKCKEKFENVYKYNKRTKDNKSGKSHGKTYKFFDQLQALENQFTTVSYPPKPQPTSTLATTNPLTLPTRPSDHGNKVISYVTTFPSTNPTLISPSPQTNTTTTTTTTTSTTNPRDSSRPQTNNNNNSVTHSLPNMNTSFSTTTASTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDQRERERVAQQDNWRMQEMARINREHEILVQERSTAAAKDATVIALLQKMYGQQNPTQQVEVEPPPQQKQTIPQSLPPILMPNNNFEVKKINNGHSVTSTTTGTVATAATTTTTSPVNSSSSRWPKAEVHALIRIRTSLETKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKRVRESSKERREDSKTCPYFHELEALYKEKSKSSKNPFGIFQNMKPNEMMLMMTEPLMVQPEQQWRPPPQSLEEGVGMENASEEYHENEENGGDDDDNIEEDGDSVEDEGANPCEIATNN* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1343 618 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 1 607 - -
Gso16g1343 618 CDD GT1 76 141 - -
Gso16g1343 618 MobiDBLite consensus disorder prediction 1 20 - -
Gso16g1343 618 PANTHER - 1 607 - -
Gso16g1343 618 MobiDBLite consensus disorder prediction 168 192 - -
Gso16g1343 618 MobiDBLite consensus disorder prediction 374 393 - -
Gso16g1343 618 ProSiteProfiles Myb-like domain profile. 70 134 IPR001005 -
Gso16g1343 618 MobiDBLite consensus disorder prediction 559 618 - -
Gso16g1343 618 SMART sant 74 136 IPR001005 -
Gso16g1343 618 SMART sant 435 497 IPR001005 -
Gso16g1343 618 CDD GT1 437 502 - -
Gso16g1343 618 MobiDBLite consensus disorder prediction 586 607 - -
Gso16g1343 618 MobiDBLite consensus disorder prediction 1 76 - -
Gso16g1343 618 Pfam Myb/SANT-like DNA-binding domain 76 162 IPR044822 -
Gso16g1343 618 Pfam Myb/SANT-like DNA-binding domain 437 524 IPR044822 -
Gso16g1343 618 Gene3D - 78 139 - -
Gso16g1343 618 Gene3D - 439 500 - -
Gso16g1343 618 ProSiteProfiles Myb-like domain profile. 431 495 IPR001005 -
Gso16g1343 618 MobiDBLite consensus disorder prediction 168 282 - -
Gso16g1343 618 MobiDBLite consensus disorder prediction 62 76 - -
Gso16g1343 618 MobiDBLite consensus disorder prediction 198 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1343 Gso-Chr16 32920226 32923238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1343 74 562 Trihelix Transcription Factor Family AT1G76890 47.318 2.57e-138 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso16g1343 Myb_DNA-bind_4 2.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1343 - - gmx:100776819 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1343 16 32920226 32923238 Gso2g0673 2 7013579 7016575 GST
Gso16g1343 16 32920226 32923238 Gso20g1342 20 43540974 43544457 PCT
Gso16g1343 16 32920226 32923238 Gso10g2013 10 47106177 47109721 PCT
Gso20g1342 20 43540974 43544457 Gso16g1343 16 32920226 32923238 PCT
Gso10g2013 10 47106177 47109721 Gso16g1343 16 32920226 32923238 PCT