Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1340 ATGAAGAGTTTTTTGTTGTGGCGTGTGGCCATTGTGGAAAAAAATAGACCCTATGTTGCAATGTTGTTCATTCAGTTTGTGTATGCTGGAATGGCCTTGCTTTCCAAGGCTGCAATTTCCAAGGGAATGAGCCCTTATGTGTTTGTTGTTTATAGACAAGCCTTTGCATCAGTTGCTCTATCTCCATTTGCTTTCTTTGACAGCAAGCAACCAGCTCCTTTGTCATGCAACTTGTTGTGCAAATTGTTTCTAGTTTCCCTTGTTGGGTTAACTGCAAGTTCAAACCTTTACTATGTTTCAATCAACTACACCACTGCAACATTTGCTGCAGCCGCCACAAATACTGTCCCTGCCATTACTTTCATCATGGCTGTTTTAATTAGGATGGAAAGCATTTCCATAAAACGTGTGCATGGATTGGCCAAGATTTTGGGGTCCGTTCTAAGCCTTGCTGGGGCAATAACATTTGCTTTAGTTAAAGGACCTCACCTGGGTTTCATGAAATGGTATCCAGAAAATCAGAACCATAGTTCTCACCCTTTAACAATTGTGCACTCCAAAGGTGATACTATTAGAGGCTCTCTTTTGATGCTCTCAGGTAACACTGCATGGTCCTTGTGGCTTATCTTGCAGGGATTTGTTGTGAAGCAGTACCCAGCAAAATTTCGCCTCACTGCTATACAATGCTTGTTTAGCTTCATGCAGTCTACTGTTGTGGCTGTTGCAGTAGAGAGGAATAATCCTTCAGCATGGAGGCTTGGATGGGATATTCATCTTCTTTCTGTGGCTTACTGTGGTGTAATTGTAACAGGCATTTGTTATTGGCTGCAAGTCTGCACAATAGAGACTAAAGGCCCGGTTTTCACAGCAATGTTCACCCCTCTAGCTCTTATAATCACAGCAATATTCTCAGCACTTTTGTGGAAAGAAACACTTTACTTGGGAAGTGTTGGTGGCACTGTTTTACTAGTGGTTGGACTCTACAGTGTCCTTTGGGGGAAGATCAAGGAGAGTGTAAAGGAGGGTGTAAAAGGAGAAAACCTAGAAGTTGAAGAAACAAAAGAGGAACCCAGATTGGAGTGCATTGTACAGCATTGA 1098 0.4235 MKSFLLWRVAIVEKNRPYVAMLFIQFVYAGMALLSKAAISKGMSPYVFVVYRQAFASVALSPFAFFDSKQPAPLSCNLLCKLFLVSLVGLTASSNLYYVSINYTTATFAAAATNTVPAITFIMAVLIRMESISIKRVHGLAKILGSVLSLAGAITFALVKGPHLGFMKWYPENQNHSSHPLTIVHSKGDTIRGSLLMLSGNTAWSLWLILQGFVVKQYPAKFRLTAIQCLFSFMQSTVVAVAVERNNPSAWRLGWDIHLLSVAYCGVIVTGICYWLQVCTIETKGPVFTAMFTPLALIITAIFSALLWKETLYLGSVGGTVLLVVGLYSVLWGKIKESVKEGVKGENLEVEETKEEPRLECIVQH* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1340 365 Pfam EamA-like transporter family 192 331 IPR000620 GO:0016020|GO:0016021
Gso16g1340 365 Pfam EamA-like transporter family 17 149 IPR000620 GO:0016020|GO:0016021
Gso16g1340 365 PANTHER WAT1-RELATED PROTEIN 14 341 IPR030184 GO:0016021|GO:0022857
Gso16g1340 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 335 - -
Gso16g1340 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 150 - -
Gso16g1340 365 PANTHER WAT1-RELATED PROTEIN 14 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1340 Gso-Chr16 32874470 32879330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1340 12 360 Nodulin-like Gene Family AT2G37460 38.286 2.09e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1340 - - gsj:114390241 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1340 16 32874470 32879330 Gso2g0672 2 6991287 6995751 GST