Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1339 ATGTCCTTCCGCAGTATTGTTCGTGATGTTAGGGACGGATTTGGAAGCTTATCAAGGCGGAGTTTTGATGTAAGGCTTTCTGGTGGGGGCAAGTCGAATAGTTTGGTCCATGAGGAGCACGAATGCCTGCCAGTTGTACAGAACAGCCGGTGGGCTAGCCTTCCGCCTGAGCTTCTTCGTGATGTTATTAAAAGATTGGAAGAAAGTGAGACTACATGGCCTGCTCGTAAGCACGTGGTTGCGTGTGCTGCTGTGTGCAGGTCCTGGAGAGGAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTCAGGTCAAATTTTCTCGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCGCGCAGAATGAACTGCACCATGCACTCAATCCCTATGTCAGCCCTTGAGCCTGGTTGCACTGTCCCGGGCCAGCCAGAGCTCCTTCCCCGCTCCCTTGAGGATTCCTTCCGAAGCATATCCTTTGCTAGATCGATCGATAACTCAACCGAGTTTAGCAGCTCCAGGTTCTCGGACATATTTCTGGCAGGCAAAGAAGAGGAGCAGGGAAAGGATAGGCCTTTAGTTCTCAAGAACAAATCTCCAAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACTGTTGCGTCCGTCAAGAATTTTCAGCTGATTGCTGCAACGCAGCCACCTGCAACTGGTGCTCCTACGCCATCATCGCAGCCTGCTCAGTCTGATCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGATATATTTACTATGGACTATAGATATCCCCTATCTGCTTTTCAGGCTTTTGCCATTTGCTTGACTAGTTTTGACACAAAACTGGCTTGTGAATAG 1275 0.4706 MSFRSIVRDVRDGFGSLSRRSFDVRLSGGGKSNSLVHEEHECLPVVQNSRWASLPPELLRDVIKRLEESETTWPARKHVVACAAVCRSWRGMCKEIVTSPEFCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSNSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPMSALEPGCTVPGQPELLPRSLEDSFRSISFARSIDNSTEFSSSRFSDIFLAGKEEEQGKDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPATGAPTPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1339 424 SUPERFAMILY Tubby C-terminal domain-like 100 424 IPR025659 -
Gso16g1339 424 Gene3D Tubby Protein; Chain A 108 424 IPR025659 -
Gso16g1339 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Gso16g1339 424 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Gso16g1339 424 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Gso16g1339 424 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Gso16g1339 424 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Gso16g1339 424 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Gso16g1339 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Gso16g1339 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Gso16g1339 424 PANTHER TUBBY-RELATED 1 424 - -
Gso16g1339 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 424 - -
Gso16g1339 424 Pfam F-box domain 51 97 IPR001810 GO:0005515
Gso16g1339 424 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Gso16g1339 424 Gene3D - 46 99 - -
Gso16g1339 424 SUPERFAMILY F-box domain 42 95 IPR036047 GO:0005515
Gso16g1339 424 Pfam Tub family 112 419 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1339 Gso-Chr16 32859999 32864886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1339 1 424 TUB Transcription Factor Family AT1G76900 69.499 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso16g1339 Tub 6.3e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1339 K19600 - gmx:100803729 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1339 16 32859999 32864886 Gso2g0671 2 6980575 6985381 GST
Gso16g1339 16 32859999 32864886 Gso20g1343 20 43561649 43565729 PCT
Gso16g1339 16 32859999 32864886 Gso10g2012 10 47085454 47089518 PCT
Gso20g1343 20 43561649 43565729 Gso16g1339 16 32859999 32864886 PCT
Gso10g2012 10 47085454 47089518 Gso16g1339 16 32859999 32864886 PCT