Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1320 ATGTCCTTGCTAACGGTGGCGCACCAAAGGGGGTCAGGTGAGTTTATCCGGTTCACGGAAAGTCATGGCGGTGGTGGCGATGACGTCAGTGGTGACGGTGAACATGGTTGTGGACATGATGATGGAAGTGGTGCTGGAGGTTCACTAGGGTTGAATTTTAACCAAGTGATGCAACAAGGTGAGGTGACAATGCAAGGTGGTTCATTGGTTTCAGGGTATAACAGGGGTGATCCAGAGTTGAGAGAAATAGTTTCAGCTTTGACACACGTGGTGTCTTCAGGGTCTGGCCAGAGGAGCACCGAATGGACCCAGCAAAGTGGTTTTCCTATGATGTCTGCTTCTTCTCTTTCACGTTTGTCTGCTTTCTCTTCTTCTTCTCCTTCTCCTTCTTCTGGAGCCTCTTGGGTTGGCCACAAAAGAGGCAGAGAAGAAGAAGAGAATAGTACTTCACATAACTTGATGCAACAACAACAACAAAGTGCTCCAAGACTCTTTAGAAACATTGGTGACTTCATGGTGCCTTCTCAAGGAGACTCATCATCAGTGACAGAAGAAGCCCCCACCTCCACAACTACAACTGTAACCACCGTCACAACGGCGGTTACTGAAAACCCACCAGGAGGTGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTAGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGAGCAAAGCTTAACTTCCCTGAAAATGTAAGAGCAGTTCCACCCATTCAACCTTTTCAAGCCACCACTAGGCTAACCGTTTCTGATTCCACCACCTCTCAATTCCGGCCACTCTCCGCGGTGGCGCCACCCTTCATTCAGCAGCCACAGATTCAGGGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAACAAATACAACAACAACAGCAGCAGCAGCGGCAGCAGCAACAACAACAACAACCATCTAGTTTGCTTCAGCAGTTGTACTATAATGCACAATTTGCTTCACTTCAATCACCTTCAATGCTATCATCATCTCCTTCATTTTCTTCTTCTGTGTCTCCAGCACCATTCCCATTATTCACAACCTCTGCTTCTTTCCCCTTGTTTTCAAGTCAACAAATGGGCTATTTCCAGCCACCGGAAAGCCGCAATCCCGCTGGCGGCGTGCCGGAGTTTCCAACGTCCACATGGTCGGATACCAGTAGCCAGCCACCACCTTCTGGTTGA 1338 0.4873 MSLLTVAHQRGSGEFIRFTESHGGGGDDVSGDGEHGCGHDDGSGAGGSLGLNFNQVMQQGEVTMQGGSLVSGYNRGDPELREIVSALTHVVSSGSGQRSTEWTQQSGFPMMSASSLSRLSAFSSSSPSPSSGASWVGHKRGREEEENSTSHNLMQQQQQSAPRLFRNIGDFMVPSQGDSSSVTEEAPTSTTTTVTTVTTAVTENPPGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQATTRLTVSDSTTSQFRPLSAVAPPFIQQPQIQGSSDLIRDYLQYSQLLQSDFQQQQIQQQQQQQRQQQQQQQPSSLLQQLYYNAQFASLQSPSMLSSSPSFSSSVSPAPFPLFTTSASFPLFSSQQMGYFQPPESRNPAGGVPEFPTSTWSDTSSQPPPSG* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1320 445 ProSiteProfiles AP2/ERF domain profile. 214 271 IPR001471 GO:0003700|GO:0006355
Gso16g1320 445 SUPERFAMILY DNA-binding domain 214 272 IPR016177 GO:0003677
Gso16g1320 445 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Gso16g1320 445 PRINTS Ethylene responsive element binding protein signature 237 253 IPR001471 GO:0003700|GO:0006355
Gso16g1320 445 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 79 414 - -
Gso16g1320 445 Pfam AP2 domain 214 263 IPR001471 GO:0003700|GO:0006355
Gso16g1320 445 Coils Coil 334 354 - -
Gso16g1320 445 MobiDBLite consensus disorder prediction 426 445 - -
Gso16g1320 445 CDD AP2 214 273 IPR001471 GO:0003700|GO:0006355
Gso16g1320 445 SMART rav1_2 214 277 IPR001471 GO:0003700|GO:0006355
Gso16g1320 445 MobiDBLite consensus disorder prediction 19 43 - -
Gso16g1320 445 PANTHER DNA-BINDING DOMAIN 79 414 IPR044808 GO:0003700|GO:0009873
Gso16g1320 445 MobiDBLite consensus disorder prediction 173 194 - -
Gso16g1320 445 MobiDBLite consensus disorder prediction 120 160 - -
Gso16g1320 445 MobiDBLite consensus disorder prediction 410 445 - -
Gso16g1320 445 Gene3D AP2/ERF domain 213 273 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1320 Gso-Chr16 32598981 32601745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1320 211 278 AP2-EREBP Transcription Factor Family AT2G33710 77.941 5.66e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso16g1320 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1320 - - gmx:100817436 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1320 16 32598981 32601745 Gso2g0660 2 6812491 6814731 GST
Gso19g0897 19 35278165 35303093 Gso16g1320 16 32598981 32601745 PCT
Gso16g0393 16 4477208 4479422 Gso16g1320 16 32598981 32601745 PCT
Gso16g1320 16 32598981 32601745 Gso20g1356 20 43696062 43698335 PCT
Gso16g1320 16 32598981 32601745 Gso10g1998 10 46960478 46962268 PCT
Gso20g1356 20 43696062 43698335 Gso16g1320 16 32598981 32601745 PCT
Gso10g1998 10 46960478 46962268 Gso16g1320 16 32598981 32601745 PCT