Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1288 ATGAGAGGAAGAGGCAGAGAGCTTCTTAGCCTCTCTTTTTCTCTAAAGCACAAACCTTTAGCAAAATCAGCATCACCATCCTCTTCTTTCTTTCGAAGTAGCATCACATTCTCAACCTCTTCCTCCTCCGTAGCCCCTCCCATCAAAGAACCAAAGACTTCAACTTCGTCATCCAAGTCACAAAGGGACTCGCTGATTTTCGAACGGTTCAAGCAAAGAAAACTCAAGGGGTCTCCAAAAGACTCAAAGGGTACCCCTCAAGTGTGTTCAACTTCAGTGCCATTAAGTTTGAATGCTGATACTGAGATGGTGGTTCAAAAGGGTGTGCAGAATGAGAATGACCCCACCATGGTGGTTGGAGGTTTCAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGAGGGGATTGGTGAGTTTGAACCTAGTGAGATACAGTGTGTGGCTATTCCTGCTGTTTTGGAAGGGAAGAGTGTGCTGTTGAGTTCACCATCTGAACCTGGCAGAACCTTGGCCTTCTTGTTGCCTCTTATTCAGCTGCTAAGACGGGACAGAGAGTTGCCTGGTTCAAATTCAAAGCATCCACGAGCCATCGTGCTTTGCGCTACAGAGGAGAAAGCTGCACAGTGCTTTAATGCTGCAAAATATATCATCCACAATGTAGAATTGAAGTCTGTAAAGGATCGTCCTTCCCCAGGTAATGGGGAGTCACATGCCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTGAATACATTGAAGAGGGGAGTGTTGTTCCTGCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATACTTGGTGGTGGCCTTGGTCCTGATATCCATAAAATTCTGAGACCATTACAAGATCAGGAATCAAAATCTTCTGTCAAAAGATTACAAACTATTTTGGTGATTTCAGCAATAGCTGAGGTTTTGGGTGAACAATCCCCAATTGTAAAGCATCTTGAGTGCGATCATGCCGGAAATATTTCTGCAATGTCTCTAGAAATGGAACAAACAGAAGTCTTTCATTTCACAGAGTCCCTTCACGCTCTTAGGAAAAAAGTGGCAGAGGCCATGGATTCCCTTTTGAAACAACAGTAG 1122 0.4447 MRGRGRELLSLSFSLKHKPLAKSASPSSSFFRSSITFSTSSSSVAPPIKEPKTSTSSSKSQRDSLIFERFKQRKLKGSPKDSKGTPQVCSTSVPLSLNADTEMVVQKGVQNENDPTMVVGGFKELGVSEELVEVMEGIGEFEPSEIQCVAIPAVLEGKSVLLSSPSEPGRTLAFLLPLIQLLRRDRELPGSNSKHPRAIVLCATEEKAAQCFNAAKYIIHNVELKSVKDRPSPGNGESHASIGLMIGTPCEILEYIEEGSVVPAEIRYLVLDEADCILGGGLGPDIHKILRPLQDQESKSSVKRLQTILVISAIAEVLGEQSPIVKHLECDHAGNISAMSLEMEQTEVFHFTESLHALRKKVAEAMDSLLKQQ* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1288 373 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 286 373 IPR002004 GO:0003723
Gso16g1288 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 373 - -
Gso16g1288 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 297 IPR027417 -
Gso16g1288 373 Pfam Poly-adenylate binding protein, unique domain 323 367 IPR002004 GO:0003723
Gso16g1288 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 373 - -
Gso16g1288 373 SMART poly_2 310 372 IPR002004 GO:0003723
Gso16g1288 373 Gene3D - 96 314 IPR027417 -
Gso16g1288 373 SMART ultradead3 139 325 IPR014001 -
Gso16g1288 373 Gene3D - 315 373 - -
Gso16g1288 373 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 313 IPR014001 -
Gso16g1288 373 MobiDBLite consensus disorder prediction 37 63 - -
Gso16g1288 373 Pfam DEAD/DEAH box helicase 145 313 IPR011545 GO:0003676|GO:0005524
Gso16g1288 373 SUPERFAMILY PABC (PABP) domain 316 369 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1288 Gso-Chr16 32258848 32261535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1288 119 293 Eukaryotic Initiation Factors Gene Family AT3G19760 26.374 3.84e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1288 - - gmx:102662794 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1288 16 32258848 32261535 Gso2g0640 2 6632072 6635295 GST