Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1281 ATGTCCTCCTCCTCCATTAGCTATGGATGGAAATATGATGTGTTCCTCAGCTTCAGAGGTTCTGATACTCGCCATGGTTTTACTGGTCATCTCTACAAAGCTCTCTTAGACAGAGGAATCTACACCTTTATTGACAATGAGGAGCTTCAAAGAGGAGAAGAGATCACACCATCACTTGTCAAGGCAATTGAAGACTCTAGGATTGGCATCCTTGTTTTCTCTAAGAACTATGCTTCTTCCACGTTTTGCTTAGATGAACTTGTACACATCCTTGCCTGTGTTAAAGAAAAGGGTACAATGGTTTTACCGGTTTTTTATGAGGTTGATCCCTCTGATGTACGACACCAAAGAGGTAGCTACGAAGAAGCACTGAATAAACATAAGGAGAAGTTCAATGACGACAAAGAGAAATTGCAGAAATGGAGGATTGCTCTGCGTCAAGCAGCTAACTTGTCTGGTTATCATTTCAAACATGGGAACGAAAATGAATATGATTTTGTTGGCAAGATTATTAAAGAGGTCTCCCGAAGAATTAGTCGTACTCATTTGCATGTTGCGAATAACCTGGTTGGATTGGAGTCTCGAGTGCTGCATGTAACCTCCCTTTTAGATGATAAATATGATGGAGTTCTCATGGTAGGAATCCATGGAATTGGCGGGGTAGGAAAAACAACGATTGCTCGAGAAGTTTATAATTTGATTGCTGATCAATTTGAATGGTTGTGTTTTCTTGATAATGTGAGAGAAAATTCAATTAAACATGGATTGGTGCATCTCCAAAAGACACTTCTTTCTAAAACAATTGGAGAGAGTAGTATTAAGTTAGGAAGTGTTCACGAAGGAATTCCAATAATAAAGCATAGGTTCCACCTAAAGAAGGTTCTTTTGGTTGTTGATGATGTTGACGATCTAGATCAGTTGCAGGCAATTGTTGGAGGGACCGATTGGTTTGGTTCTGGCAGCAGAGTCATCATTACCACTCGAGACAAACATTTACTAACATGCCATGGGGTTACAAGCACATATGAGGTTGATGGGTTAAATAAGGAAGAGGCTCTTAAATTGCTTAGTGGAACTGCTTTCAAAATTGACAAAGTTGATCCATGTTATATGAGAATTTTAAACCGTGTGGTAACTTATGCTTCTGGCCTTCCACTGGCTTTGATGGTAATAGGTTCCAACTTGTTTGGAAAAAGCATAGAAGAATGGGAATCTTCCATAGATCAGTATGAGAGAATTCCTAATAAAAAGATTCAAGACGTACTCAAAGTAAGTTTTGATTCTTTAGAAGAAGATGAGCAACAAATTTTTCTTGATATTGCTTGTTGCTTCAAAGGATATGCTTTGACATATGTTAAAGAAATACTTTCTACTCATCACAATTTCTGTCCGGAATATGCTATTGGAGTGTTGATTGACAAATCTCTCATAAAGGTCGATGCAGATCGTGTGATATTGCATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGGAATCACCAAGAGAGCCAGGAAAACGCAGTAGGTTATGGTTTCCTGATGATATAGTTGAAGTTTTGGAAGAAAATAAGGGAACTAGCAGAATTCAAATGATAACTCTGGATTACCTCAAATATGAAGCAGCAGTAGAATGGGATGGAGTGGCATTCAAGGAGATGAATAACCTCAAAACACTTATTATTAGAAGTGGTTGTCTTCATGAAGGTCCCATACATCTTCCGAATAGTTTAAGAGTATTAGAATGGAAGGTATACCCTTCACCATCTTTACCAATTGATTTCAATCCCAAGAAACTTGTCATACTGAAGTTTCCTTATAGTTGCTTAATGTCTCTTGATGTGCTCAAGTCGAAGAAGATTTTTTTGAAGATGAGAGTTTTGAATTTTAATGATTGTCAATATATAAGAGAGATACCTGACCTATATGGTGTCCCAAATTTACAAGAATTATCATTTTGCAATTGTGAGAATTTAATTAAAATTCATGAATCGGTTGGATTTCTGGATAAACTTAAAATCTTGTATGCTGAAGGCTGCAGCAAGCTTATGAGTTTTCCGCCAATCAAATTGACCTCTCTTGAAATACTCCAGCTTTCATATTGTCATAGTCTTGAGAGTTTTCCAGAAGTATTAGGGAAGATGGAAAATGTAACTTCTCTTGATATTTATGGCACTGTTATAAAAGAACTGCCATTTTCAATTCAGAATCTCACACGGCTTCGAAGACTTGAACTGGTGAGATGTGAGAATCTTGAACAAATTAGAGGGGTTCCACCTAATTTAGAAACATTCTCTGTAAAAGATTGCTCATCCTTGAAAGATTTAGATCTCACACTTCTTCCTTCATGGACAAAGGAACGTCATCTTTTAAAGGAGCTTCGTTTACATGGAAACAAGAATCTTCAAAATATTAAAGGGATTCAACTGAGCATAGAAGTACTGAGTGTAGAATACTGCACATCCTTGAAAGATTTAGATCTCACACTTCTTCCTTCATGGACAAAGGAACGTCATCTTTTAAAGGAGCTTCATTTACATGGAAACAAGAATCTTCAAAAAATTAAAGGGATTCCACTGAGCATAGAAGTACTGAGTGTAGAATACTGCACATCCTTGAAAGATGTAGATGTTACTCTTCCTCCTGCATGCACCCAAGAATGTTGCATTTTGAGTACACTTTTCTTTGATGCTTGTGGGATGAATCTTCATGAAATACACGGGATTCCGTCGATCATTAGAACTTGTTCTGCCAGAGGCTGTCAATACTCGACATCTGTGCCCACAGGCATGTTACTGAATAAGGAATTGCATGAGGTCAGTGGATTCAAATTGCTCAGAAGAAGGATTCTAGAGTGGTTCGAGCATAGTACAAACGAATCGTCAATTTCTTTCTCATTTCGTACCAAGTTCCCTGTGATATCTTTCTGTGTTGTTGCTAGACCCAACACATATTTAAACCTTGGACCCATATTTATTTTCGATGGTATGAAACGTTTGTTACTAAGGGAGTTCCATTTTGACCAAGTAGGTGCTCATGTGGTTTTGGACCAAATAAGTCATCATTTGGTTATTTTTTAG 3084 0.3761 MSSSSISYGWKYDVFLSFRGSDTRHGFTGHLYKALLDRGIYTFIDNEELQRGEEITPSLVKAIEDSRIGILVFSKNYASSTFCLDELVHILACVKEKGTMVLPVFYEVDPSDVRHQRGSYEEALNKHKEKFNDDKEKLQKWRIALRQAANLSGYHFKHGNENEYDFVGKIIKEVSRRISRTHLHVANNLVGLESRVLHVTSLLDDKYDGVLMVGIHGIGGVGKTTIAREVYNLIADQFEWLCFLDNVRENSIKHGLVHLQKTLLSKTIGESSIKLGSVHEGIPIIKHRFHLKKVLLVVDDVDDLDQLQAIVGGTDWFGSGSRVIITTRDKHLLTCHGVTSTYEVDGLNKEEALKLLSGTAFKIDKVDPCYMRILNRVVTYASGLPLALMVIGSNLFGKSIEEWESSIDQYERIPNKKIQDVLKVSFDSLEEDEQQIFLDIACCFKGYALTYVKEILSTHHNFCPEYAIGVLIDKSLIKVDADRVILHDLIEDMGKEIVRQESPREPGKRSRLWFPDDIVEVLEENKGTSRIQMITLDYLKYEAAVEWDGVAFKEMNNLKTLIIRSGCLHEGPIHLPNSLRVLEWKVYPSPSLPIDFNPKKLVILKFPYSCLMSLDVLKSKKIFLKMRVLNFNDCQYIREIPDLYGVPNLQELSFCNCENLIKIHESVGFLDKLKILYAEGCSKLMSFPPIKLTSLEILQLSYCHSLESFPEVLGKMENVTSLDIYGTVIKELPFSIQNLTRLRRLELVRCENLEQIRGVPPNLETFSVKDCSSLKDLDLTLLPSWTKERHLLKELRLHGNKNLQNIKGIQLSIEVLSVEYCTSLKDLDLTLLPSWTKERHLLKELHLHGNKNLQKIKGIPLSIEVLSVEYCTSLKDVDVTLPPACTQECCILSTLFFDACGMNLHEIHGIPSIIRTCSARGCQYSTSVPTGMLLNKELHEVSGFKLLRRRILEWFEHSTNESSISFSFRTKFPVISFCVVARPNTYLNLGPIFIFDGMKRLLLREFHFDQVGAHVVLDQISHHLVIF* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1281 1027 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1281 1027 PRINTS Disease resistance protein signature 288 302 - -
Gso16g1281 1027 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1281 1027 PRINTS Disease resistance protein signature 690 706 - -
Gso16g1281 1027 Gene3D Ribonuclease Inhibitor 691 938 IPR032675 -
Gso16g1281 1027 Pfam NB-ARC domain 199 418 IPR002182 GO:0043531
Gso16g1281 1027 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Gso16g1281 1027 SUPERFAMILY L domain-like 782 969 - -
Gso16g1281 1027 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 154 IPR035897 -
Gso16g1281 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 440 IPR027417 -
Gso16g1281 1027 Gene3D Ribonuclease Inhibitor 518 690 IPR032675 -
Gso16g1281 1027 Gene3D - 346 430 IPR042197 -
Gso16g1281 1027 PANTHER ARCHAEAL ATPASE 22 875 - -
Gso16g1281 1027 PANTHER ARCHAEAL ATPASE 884 970 - -
Gso16g1281 1027 SMART till_3 11 151 IPR000157 GO:0007165
Gso16g1281 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 884 970 IPR044974 GO:0006952
Gso16g1281 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 875 IPR044974 GO:0006952
Gso16g1281 1027 Gene3D - 182 342 IPR027417 -
Gso16g1281 1027 Pfam TIR domain 11 181 IPR000157 GO:0007165
Gso16g1281 1027 Gene3D - 8 181 IPR035897 -
Gso16g1281 1027 SUPERFAMILY L domain-like 537 835 - -
Gso16g1281 1027 SUPERFAMILY "Winged helix" DNA-binding domain 416 523 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1281 Gso-Chr16 32183962 32188338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1281 12 775 WRKY Transcription Factor Family AT4G12020 29.811 1.89e-76 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1281 - - gmx:100805145 2025.37