Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1280 ATGTCCTCCACTTCCTTTAGCAATGGATGGAAATATGATGTTTTCCTCAACTTCAGAGGCTCTGATACTCGCTATGGTTTTACTGGTCATCTCTACAAAGCTCTGTGTGATAGAAAAGTCCGCACCTTCATTGATGATGAGGAGCTTCAAAGAGGAGAACAGATCACACCATCACTCTTGAAGGCAATTGAAGAGTCCAGGATTTTCATCCCAGTGTTCTCCAAGAACTATGCCTCTTCCACTTTTTGCTTAGATGAACTTGTCCACATCTTTGCCTGTGTTAAGGAAAAGAGTAGATTAGTTTTGCCGGTTTTTTATGAGGTTGATCCTTCTCATGTACGACATCAAAGAGGTAGCTACAAAGAAGCACTGAATAGCCATAAGAAGAGGTTCAATGATGACCAAGAGAAATTGCAGAAATGGAGGAATGCTCTGAGTCAAGCAGCTAACTTGTCGGGCTATCATTTCAAACAGGGGAAGGAAGAATATGAATATGACTTTATTGCTAAGATCGTTAAAGAGGTTTCTCAAAAAATTAATCGCACTCTTTTGCATGTTGCGGATTTCCCCGTTGGACTGGAGTATCGTATGCAAGACGTAAACTCACTTGTGAATATTGAATCTGGTGGAGTCCACATGATAGGAATCCATGGAGTCGGCGGAGTAGGCAAATCAACACTTGCTCGAGCAATTTATAATTTGATTGCCGATCAATTTGAAGGGTATTGTTTTCTTAATGTGAGAGAATACTCAATGCAAAATGGATTGGTGCATCTCCAAAAGAAACTTCTTTCTAAAACAATTGGAGAGAAGGGTATTAAGTTAGGAGGTGTCAATGAAGGAATTCCAATAATAAAGCATAGGCTCCACTTAATGAAGATTCTTTTGTTTCTTGATGATGTCGATGATCTAGATCAGTTGCGGGCAATTGCTGGAGGGACAGAATGGTTTGGTTCTGGTAGCAGGATCATCATTACCACCCGAGACAGGCATTTACTAACTTGCCATGGGGTTAAAAATAAATATGAGGTACATGGGTTAAATAAAGAAGAAGCTCTTAAATTGCTTACCTGGAGTGCTTTTAAAATTGATAAAGTGGATCCATGTTACGTCAACATTTTAAACCGTGTAGTAACTTATACTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTCTGGAAAAAGGAAAGAAGTATGGGAATCTGCCCTAGATCAGTATGAAAGAATTCCAGATAAAAAGATTCAAGACATACTTAAAGTAAGTTTTGATTCTTTACAAGAAGATGAGCATAAAATTTTTCTTGATATTGCTTGTTGCTTCAAAGGATATGATTTTACATATGTTAAAGAAGTACTTTCTATCCATCATGGTTTTTGCCCTAAATATGCTATAGGAGTGTTGATTGACAAATCTCTCCTATGTCGACGGTCCAGTTACTTGACAATGCATGACTTGATAGAGGACATGGGTAAAGAAATTGTAAGACAGGAATCTCCAGGAGAGCCAGGCAAACGCAGTAGGTTATGGTTGCATGAAGATATAGTTCAAGTCTTAGAAGAAAATGAGGGAACTAGTAGAATTCAAATGATAATTCTGGATTGCCTCAAATATGAAGTAGTACAATGGGATGGAATGGCCTCCAAGGAGATGAATAACCTCAAAACACTCATTGTTAAAGGTGGTTGCTTTTCCAATGGTCCCAAACATCTTCCAAATAGTTTAAGAGTACTAGACTGGTGGGGATATCCTTCACGATCTTTTCCAAGTGATTTTCAACCGAAGAAACTTGTCAGATTACAGTTACCTTATAGTCACTTAATGTGTCTCAATTTGTTGTCTTCGAACAAGATGTTCGTGAATATGAGTGTTTTGAATTTTAATGACTCTCCATATATAACAGAGATACCTAACTTATGTTGTGTCCCAAATTTACAAAAATTATCATGTCGCTATTGTGATAATTTGATTAAAATACACAAATCGGTTGGATTCCTGGATAAACTTGAAGTCTTAGATGCTGATAAATGCAGCAAACTTAGCAGATTTCCACCTCTCTTGAAATTGACCTCTCTTAAAGAACTCGGGCTTTCATGTTGTCCTAGTCTTGAGATATTTCCAAAAATATTAGGAAAGATGGAAAATGTAACTTCCCTTTATATTTCATACACGCCCATAAAAGAACTGCCATTTTCCATTCAAAATCTCACTCGACTTCAAAGACTTGAACTAGTGGCTTGTGGAATTGTTCAGCTTCCAAGTAGCATCTATGCGATGCAGGAACTTCGCCATTTGATTGTGAAGGCATGCAAGGGGTTGCTTTTACCCAAAGAGGATAAAGGTGAGGTACAAACGAACTCATTGGTCTTTAAAAACACCATTGTTCTTGATCTTTCAAAGTGCAATATATCAGACAAAAGCCTTCAAAGAGGTCTCCATTTGTTTGCCAATATGAGAGAATTATACCTATCATATAATGATTTCACAATTCTTCCTGCAAGCATTAAAGAATGTCACGTTTTGACAAAAATTTATTTGAAAGGTTGTGAGAATCTTCAGGAAATTAGAGGGGTTCCACCTAACTTAGAAGGATTCTCTGTAATAGAGTGCTCATTGTTGAAAGATTTAGACCTCACACTTCTTCCTACAGAGAACAAAAAACGGTTCTTTTTGAGGATGCTTTATGTAACTGGATGCAAGAATCTTAAAAAAATTGAAGGGATTCCACAGAGGATAGAAGTGCTCAGAGTAACATTTTGCTCATCCTTGAAAATTGTAGAATTTACTCTTCATCCTGCAGGCACCCAAGGTTTTCACCTTCGGAGGGAAATTGTTCTGGATAACTGTGAGAATCTTCAAGAAATAAAAGGGATTCCATTTGGCATTCAATATTTTTCGGCAAGGGATTGTCATTCATTGTCTTCCGAGTGCAGAAGCATGTTACTGAGTCAGGAATTGCATGAGACTAGGGAATGTGGAGTGTTTTATTTGGCAGGAACAAGGATTCCAGAATGGTTTCATCATTGTATCAATGGATCGTCAATTTCTTTCTGGTTTCGTAACAATTTCCCTTCAATATCTCTGGGTGTTGTTGCTGGACCCAAGAGTTATTTAAATGTGCATTCCAGATTTAGGATCAATATCAATAACAATATAACATTTAATTTAGGAATAAGGAATCATTTGGTTCAAGTACGTCATCATCGGGTGGAGCTAGCCTCGATACCTATAGTTTTTTGGGGAAATAAATGGAATCGTGTGGAATGTACTGTATACCCACTTCAAGAGTTCATCAAACAAATTGGAATCCATGTTTTGGAACAAGGAAACAACATGGAGGACATCCAATTTACCAATCCGCTGTCGTCCTCAGGGGAAATGAACAAAAAGAGGAAAAAGAGGGGAACCAGGCGTCCTGCTCCTCCCCAAGTACTGGAGGGCCCATTGTCCAGATTGATTTTTAAAGTAAACTCAGTTTTATGA 3492 0.3794 MSSTSFSNGWKYDVFLNFRGSDTRYGFTGHLYKALCDRKVRTFIDDEELQRGEQITPSLLKAIEESRIFIPVFSKNYASSTFCLDELVHIFACVKEKSRLVLPVFYEVDPSHVRHQRGSYKEALNSHKKRFNDDQEKLQKWRNALSQAANLSGYHFKQGKEEYEYDFIAKIVKEVSQKINRTLLHVADFPVGLEYRMQDVNSLVNIESGGVHMIGIHGVGGVGKSTLARAIYNLIADQFEGYCFLNVREYSMQNGLVHLQKKLLSKTIGEKGIKLGGVNEGIPIIKHRLHLMKILLFLDDVDDLDQLRAIAGGTEWFGSGSRIIITTRDRHLLTCHGVKNKYEVHGLNKEEALKLLTWSAFKIDKVDPCYVNILNRVVTYTSGLPLALEVIGSNLSGKRKEVWESALDQYERIPDKKIQDILKVSFDSLQEDEHKIFLDIACCFKGYDFTYVKEVLSIHHGFCPKYAIGVLIDKSLLCRRSSYLTMHDLIEDMGKEIVRQESPGEPGKRSRLWLHEDIVQVLEENEGTSRIQMIILDCLKYEVVQWDGMASKEMNNLKTLIVKGGCFSNGPKHLPNSLRVLDWWGYPSRSFPSDFQPKKLVRLQLPYSHLMCLNLLSSNKMFVNMSVLNFNDSPYITEIPNLCCVPNLQKLSCRYCDNLIKIHKSVGFLDKLEVLDADKCSKLSRFPPLLKLTSLKELGLSCCPSLEIFPKILGKMENVTSLYISYTPIKELPFSIQNLTRLQRLELVACGIVQLPSSIYAMQELRHLIVKACKGLLLPKEDKGEVQTNSLVFKNTIVLDLSKCNISDKSLQRGLHLFANMRELYLSYNDFTILPASIKECHVLTKIYLKGCENLQEIRGVPPNLEGFSVIECSLLKDLDLTLLPTENKKRFFLRMLYVTGCKNLKKIEGIPQRIEVLRVTFCSSLKIVEFTLHPAGTQGFHLRREIVLDNCENLQEIKGIPFGIQYFSARDCHSLSSECRSMLLSQELHETRECGVFYLAGTRIPEWFHHCINGSSISFWFRNNFPSISLGVVAGPKSYLNVHSRFRININNNITFNLGIRNHLVQVRHHRVELASIPIVFWGNKWNRVECTVYPLQEFIKQIGIHVLEQGNNMEDIQFTNPLSSSGEMNKKRKKRGTRRPAPPQVLEGPLSRLIFKVNSVL* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1280 1163 PANTHER ARCHAEAL ATPASE 942 1093 - -
Gso16g1280 1163 PANTHER ARCHAEAL ATPASE 22 943 - -
Gso16g1280 1163 Gene3D Ribonuclease Inhibitor 528 708 IPR032675 -
Gso16g1280 1163 Gene3D - 180 340 IPR027417 -
Gso16g1280 1163 Pfam NB-ARC domain 203 421 IPR002182 GO:0043531
Gso16g1280 1163 SUPERFAMILY L domain-like 486 906 - -
Gso16g1280 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 440 IPR027417 -
Gso16g1280 1163 Gene3D Ribonuclease Inhibitor 709 996 IPR032675 -
Gso16g1280 1163 PRINTS Disease resistance protein signature 213 228 - -
Gso16g1280 1163 PRINTS Disease resistance protein signature 288 302 - -
Gso16g1280 1163 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1280 1163 PRINTS Disease resistance protein signature 690 706 - -
Gso16g1280 1163 SMART till_3 11 151 IPR000157 GO:0007165
Gso16g1280 1163 Gene3D - 346 430 IPR042197 -
Gso16g1280 1163 ProSiteProfiles TIR domain profile. 10 179 IPR000157 GO:0007165
Gso16g1280 1163 Coils Coil 124 144 - -
Gso16g1280 1163 Pfam TIR domain 11 182 IPR000157 GO:0007165
Gso16g1280 1163 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 154 IPR035897 -
Gso16g1280 1163 Gene3D - 8 179 IPR035897 -
Gso16g1280 1163 MobiDBLite consensus disorder prediction 1119 1147 - -
Gso16g1280 1163 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 942 1093 IPR044974 GO:0006952
Gso16g1280 1163 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 943 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1280 Gso-Chr16 32146067 32159943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1280 6 776 WRKY Transcription Factor Family AT4G12020 29.737 2.18e-75 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1280 - - gsj:114389198 2312.34