Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1279 ATGTCCTCCTCTTCCTTTAGCTATGGATGGAAATATGATGTGTTCCTCAGCTTCAGAGGCTCTGATACTCGCCATGGTTTTACTGGTCATCTCTACAAAGCTCTGTGTGATAGAGGAATCCACACCTTCATTGATGATGAAGAGCTTCAAAGAGGAGAAGAGATCACACCATTACTTGTCAAGGCAATTGAAGGGTCCAGGATTGCCATCCCTGTGTTCTCTAAGAACTATGCTTCTTCCACTTTTTGCTTAGATGAACTTGTCCACATCCTTGCCTGTGTTAAGGAAAAGGGTACACTGGTTTTACCAGTTTTTTATGAGGTTGATCCCTCTGATGTACGACATCAAAGAGGTAGCTACAAAGATGCACTGAATAGCCATAAGGAGAGGTTCAATGATGACCAAGAGAAATTGCAGAAATGGAGGAATTCTCTGAGTCAAGCAGCTAACTTGGCTGGTTATCATTTCAAACATGGGATTGAAAATGAATATGAATATGACTTTATTGGCAACATTGTTAAAGAGGTCTCCCAAAAAATTAATCGCACTGTTTTGCATGTTGCGGATTACACCGTTGGACTGGAGTTTCGAATGAAAGAAGTAAACTCGCTTTTGAATTTCAAATCTGGTGGAGTACACATGGTAGGGATCCACGGAGTTGGCGGAGTAGGCAAAACAACACTTGCTCGAGCAATTTACAATTTGATTGCTGATCAATTTGAAGTATTGTGTTTTCTTGATAATGTGAGAGAAAACTCAATTAAAAATGGATTGGTGCATCTCCAAGAGACACTTCTTTCTAAAACAATTGGAGAGAAGGGTATTAAGTTAGGAAGTATCAACGAAGCAATTCCAATAATAAAGCATAGGCTCCACCGAAAGAAGGTTCTTTTGGTTCTGGATGATGTTGACAAACCAGATCAGTTGCATGCAATTGCTGGAGGGATGGATTGGTTTGGTTCTGGTAGCAGAGTCATCATTACCACTCGAAACAGACATTTACTAACATGCCATGGGGTTGAAAGCATATACGAGGTTCATGGGTTAAATCATAAAGAAGCTCTTGAATTGCTTAGTTGGAGTGCTTTTAAAACTGGCAAAGTTGATCCATGCTATGTGAACATTTTAAACCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGAAAGTAATTGGCTCCAACTTGATTGGAAAAAGGATAGAAGAATGGGAATCTGCCTTAGATCAGTATCAAAGAATTCCTAATAAAGATATTCAAGACATACTTAAAGTAAGTTTTGATTCTTTAGAGGAATATGAACAGAATATTTTTCTTGATATTGCCTGTTGCTTCAAAGGATATCGTTTGTCAGAAGTTAAAGAAATACTTTTTAGTCATCACGGTTTCTGCCCACAATATGGTATAGGAGTGTTGATCGACAAATCTCTCATAAAGATTGATTGCTTTGGTAACGTGACATTGCATGACTTGATTGAAGACATGGGTAAAGAAATTGTCCGAAGGGAATCACCAGAAGAGCCTGAAAATCGCAGTAGGTTATGGTGTCCTGAAGATATAGTTCAAGTCTTAGAAGAAAATAAGGGTACTAGTAGAATTCAAATGATAGCTCTGGATTATCTCAATTATGAAGAAGTAGAATGGGATGGAATGGCCTTCAAGGAGATGAATAACCTCAAAACACTTATCATTAGAGGTGGTTGCTTTACCACAGGTCCCAAACATCTTCCAAATAGTTTAAGAGTATTAGAATGGCGGCGATATCCTTCACCATCTCTACCATTTGATTTTAATCCGAAGAAACTTGTCTCACTACAGTTACCTGATAGTTGCTTAACGTCTCTCAATTGGCTCAACTCAAAGAATAGGTTCTTGAATATGAGAGTTTTGAATTTTAATCAGTGTCATTATATAACAGAGATACCTGACGTATGTGGTGCCCCAAATTTACAAGAATTATCATTTGAATATTGTGAGAATTTAATTAAAATTCATGTATCGGTTGGATTCCTGGATAAACTTAAAATCTTGGATGCTGATGGCTGCAGCAAGCTTACAAGTTTTCCACCAATGAAATTGACCTCTCTTGAAGAACTTAAACTTTCATTTTGTGCTAATCTTGAGTGTTTTCCAGAAATATTAGGGAAGATGGAAAATGTCACTTCCCTTGATATTAAAGACACTCCCATAAAAGAACTGCCATCTTCAATTCAACATCTCAGTCGACTTCAAAGAATTAAACTGAAGAATGGTGGAGTTATTCAGTTACCAAGTACCTTTTTTGCAATGAAAGAACTTCGTTATTTGCTTGTTAACCAATGTGAGGGGTTGCTACTACCTGTAGAGAACGAAGGGAAAGAACAGATGAGCTCAATGGTGGTTGAAAATACCATTGGTTATCTTGATCTTTCACATTGCCACATATCAGACAAATTCCTTCAAAGTGGTCTCCCTTTGTTTTCCAATGTGAAAGAACTATACCTAAATGGGAATGATTTCACAATTCTTCCTGCCTGCATTCAAGAATTTCAGTTTCTGACAGAACTTTATTTGGAAGCTTGTGAGAATCTTCATGAAATTGGATGGATTCCACCGAATTTAGAAATATTCGCTGTAATAGATTGCACATCCTTGAAAGAATTAGACCTCACACTTCTTCCCACATGGAACAAAGAATGTTGCCTTTTAAGGAAGCTTCTTTTATGTGGATGCCGGAATCTTGAAAAACTTAAAGGGATTCCACTGAACATAGAAGAATTGATTGTAGAATCCTGCAATTCCTTGAAAGATCTAGATCTTACTCTTCCTCCTTCATGCACCCGACAATGTCGTATTTTGAGTAAACTTATATTGGATAGTTGTATGGATTTTGAAGAAATAAAAGGGATTCCATCCGACATTGGAGTATTTTCTGCAAGAGAATGCTCATCCTTGACTTCTGAGTGTAGAAGCATGTTACTTAACGAGGAATTACATGAAGCCGATGGGTTCAAAGAGTTTATTTTGCCAGGAACTAGAATTCCCGAGTGGTTCGAGTGTACCAATGAATCATCAATTTGTTTCTGGTTTCGTGACAAGTTCCCTGCGATATCTGTCTGTGTAGTTTCTGAACCAATGGATTCAGATGTAACGTTCAGCTTTATCATCAATGGTGTGGAACATTTACCAAAGGGTGCTATCTCTTTGGACCTATGCGTTGATCATCTGTGGATTATTGATCACATAGAGGAACTATTCAATGACTGTGTTCTTTCGGAAAATGAATGGAATCATGTGGTGTGTACTACATCATGGGTACCCCAACCAATCAAACAAATTGGAATCCATGTAATCAAACAAGGAAGCAACTTGGAGGATATCCAATTTACCAATCCACTATTGTCCAAAGAAGACCCAGATTTTCGCATACAACATGATGATTCAAGGAAACGAAAAAGACAAGAGTGA 3450 0.3791 MSSSSFSYGWKYDVFLSFRGSDTRHGFTGHLYKALCDRGIHTFIDDEELQRGEEITPLLVKAIEGSRIAIPVFSKNYASSTFCLDELVHILACVKEKGTLVLPVFYEVDPSDVRHQRGSYKDALNSHKERFNDDQEKLQKWRNSLSQAANLAGYHFKHGIENEYEYDFIGNIVKEVSQKINRTVLHVADYTVGLEFRMKEVNSLLNFKSGGVHMVGIHGVGGVGKTTLARAIYNLIADQFEVLCFLDNVRENSIKNGLVHLQETLLSKTIGEKGIKLGSINEAIPIIKHRLHRKKVLLVLDDVDKPDQLHAIAGGMDWFGSGSRVIITTRNRHLLTCHGVESIYEVHGLNHKEALELLSWSAFKTGKVDPCYVNILNRAVTYASGLPLALKVIGSNLIGKRIEEWESALDQYQRIPNKDIQDILKVSFDSLEEYEQNIFLDIACCFKGYRLSEVKEILFSHHGFCPQYGIGVLIDKSLIKIDCFGNVTLHDLIEDMGKEIVRRESPEEPENRSRLWCPEDIVQVLEENKGTSRIQMIALDYLNYEEVEWDGMAFKEMNNLKTLIIRGGCFTTGPKHLPNSLRVLEWRRYPSPSLPFDFNPKKLVSLQLPDSCLTSLNWLNSKNRFLNMRVLNFNQCHYITEIPDVCGAPNLQELSFEYCENLIKIHVSVGFLDKLKILDADGCSKLTSFPPMKLTSLEELKLSFCANLECFPEILGKMENVTSLDIKDTPIKELPSSIQHLSRLQRIKLKNGGVIQLPSTFFAMKELRYLLVNQCEGLLLPVENEGKEQMSSMVVENTIGYLDLSHCHISDKFLQSGLPLFSNVKELYLNGNDFTILPACIQEFQFLTELYLEACENLHEIGWIPPNLEIFAVIDCTSLKELDLTLLPTWNKECCLLRKLLLCGCRNLEKLKGIPLNIEELIVESCNSLKDLDLTLPPSCTRQCRILSKLILDSCMDFEEIKGIPSDIGVFSARECSSLTSECRSMLLNEELHEADGFKEFILPGTRIPEWFECTNESSICFWFRDKFPAISVCVVSEPMDSDVTFSFIINGVEHLPKGAISLDLCVDHLWIIDHIEELFNDCVLSENEWNHVVCTTSWVPQPIKQIGIHVIKQGSNLEDIQFTNPLLSKEDPDFRIQHDDSRKRKRQE* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1279 1149 Gene3D Ribonuclease Inhibitor 525 709 IPR032675 -
Gso16g1279 1149 Pfam NB-ARC domain 207 431 IPR002182 GO:0043531
Gso16g1279 1149 Gene3D - 6 178 IPR035897 -
Gso16g1279 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Gso16g1279 1149 SUPERFAMILY L domain-like 489 930 - -
Gso16g1279 1149 ProSiteProfiles TIR domain profile. 10 180 IPR000157 GO:0007165
Gso16g1279 1149 Gene3D - 348 432 IPR042197 -
Gso16g1279 1149 PRINTS Disease resistance protein signature 214 229 - -
Gso16g1279 1149 PRINTS Disease resistance protein signature 290 304 - -
Gso16g1279 1149 PRINTS Disease resistance protein signature 383 397 - -
Gso16g1279 1149 PRINTS Disease resistance protein signature 692 708 - -
Gso16g1279 1149 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 154 IPR035897 -
Gso16g1279 1149 PANTHER ARCHAEAL ATPASE 937 1096 - -
Gso16g1279 1149 PANTHER ARCHAEAL ATPASE 22 881 - -
Gso16g1279 1149 SMART till_3 11 151 IPR000157 GO:0007165
Gso16g1279 1149 Gene3D - 179 342 IPR027417 -
Gso16g1279 1149 Coils Coil 124 144 - -
Gso16g1279 1149 Gene3D Ribonuclease Inhibitor 710 921 IPR032675 -
Gso16g1279 1149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 937 1096 IPR044974 GO:0006952
Gso16g1279 1149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 881 IPR044974 GO:0006952
Gso16g1279 1149 Pfam TIR domain 11 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1279 Gso-Chr16 32140770 32145662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1279 6 775 WRKY Transcription Factor Family AT4G12020 31.566 8.65e-89 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1279 - - gmx:121173697 2286.15